miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28311 5' -53.4 NC_005905.1 + 8614 0.68 0.792649
Target:  5'- -cCGuGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUuUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 8677 0.71 0.590862
Target:  5'- uAUCGAGUCcaGcCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCuGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 8724 0.7 0.656465
Target:  5'- -cCGAGUCcaaACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGaccUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 8786 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 8833 0.75 0.416546
Target:  5'- -cCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 8896 0.67 0.847564
Target:  5'- uAUCGAGUCcaGcCCGGCUUGGGCaGAg -3'
miRNA:   3'- -UAGUUUAGacCuGGCCGAACUCGgCU- -5'
28311 5' -53.4 NC_005905.1 + 8943 0.76 0.337784
Target:  5'- -cCGAGUCcaGGCCGGCUUGAGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 9005 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 9052 0.67 0.811726
Target:  5'- -cCGAGUCcaGG-UCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGa-CCuGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11095 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11160 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11225 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11290 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11355 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11420 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11485 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11550 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11615 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11680 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11745 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.