miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28311 5' -53.4 NC_005905.1 + 11160 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11290 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11355 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11420 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11485 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11615 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11680 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 11745 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 8943 0.76 0.337784
Target:  5'- -cCGAGUCcaGGCCGGCUUGAGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 22069 0.77 0.291601
Target:  5'- -cCGAGUUUaGGCCGGCUUGAGCCa- -3'
miRNA:   3'- uaGUUUAGAcCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 17255 0.78 0.263649
Target:  5'- uAUCGAGUCcaGcCCGGCUUGGGCCGAg -3'
miRNA:   3'- -UAGUUUAGacCuGGCCGAACUCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 19897 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 19962 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 20137 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 19787 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 19742 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 17714 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 9005 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 8786 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 17145 0.8 0.208733
Target:  5'- uAUCGAGUCcaGcCCGGCUUGAGCCGAg -3'
miRNA:   3'- -UAGUUUAGacCuGGCCGAACUCGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.