miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28311 5' -53.4 NC_005905.1 + 11420 0.76 0.362795
Target:  5'- -cCGAGUCcaGACCGGCUUGGGCCa- -3'
miRNA:   3'- uaGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 17255 0.78 0.263649
Target:  5'- uAUCGAGUCcaGcCCGGCUUGGGCCGAg -3'
miRNA:   3'- -UAGUUUAGacCuGGCCGAACUCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 17714 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 19742 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 19787 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 19897 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 19962 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 20137 0.79 0.237912
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 17145 0.8 0.208733
Target:  5'- uAUCGAGUCcaGcCCGGCUUGAGCCGAg -3'
miRNA:   3'- -UAGUUUAGacCuGGCCGAACUCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 22069 0.77 0.291601
Target:  5'- -cCGAGUUUaGGCCGGCUUGAGCCa- -3'
miRNA:   3'- uaGUUUAGAcCUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 19588 0.75 0.389062
Target:  5'- uAUCGAGUCcaaGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaccUGGCCGAACUCGGcu -5'
28311 5' -53.4 NC_005905.1 + 21744 0.75 0.407253
Target:  5'- -gCGAGUauaGGCCGGCUUGAGCCGu -3'
miRNA:   3'- uaGUUUAgacCUGGCCGAACUCGGCu -5'
28311 5' -53.4 NC_005905.1 + 49456 1.07 0.003312
Target:  5'- uAUCAAAUCUGGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUUAGACCUGGCCGAACUCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 17649 0.67 0.855986
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUcGGcu -5'
28311 5' -53.4 NC_005905.1 + 17779 0.67 0.855986
Target:  5'- uAUCGAAUCcaGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUcGGcu -5'
28311 5' -53.4 NC_005905.1 + 19523 0.67 0.855986
Target:  5'- uAUCGAGUCcaGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUUAGacCUGGCCGAACUcGGcu -5'
28311 5' -53.4 NC_005905.1 + 17869 0.68 0.762819
Target:  5'- uAUCGAGUUUaGcUCGGCUUGuGCCGAg -3'
miRNA:   3'- -UAGUUUAGAcCuGGCCGAACuCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 21844 0.7 0.678259
Target:  5'- -cCGAGUCUaGGCCGGCUUGAaCCa- -3'
miRNA:   3'- uaGUUUAGAcCUGGCCGAACUcGGcu -5'
28311 5' -53.4 NC_005905.1 + 22191 0.7 0.656465
Target:  5'- aAUUuuAUCUagcccaGGCCGGCUUGGGUCGAa -3'
miRNA:   3'- -UAGuuUAGAc-----CUGGCCGAACUCGGCU- -5'
28311 5' -53.4 NC_005905.1 + 20072 0.72 0.569174
Target:  5'- uAUCGAGUCcaGG-UCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGa-CCuGGCCGAACUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.