miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28312 3' -47.5 NC_005905.1 + 8633 1.09 0.008658
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCAAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 8852 1.09 0.008658
Target:  5'- gGCCAAGCUAGCUUCGACAGAUCUCAAc -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 19941 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 19721 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17299 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 19567 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17519 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17409 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17693 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 9071 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 20116 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11504 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11114 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11244 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11309 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11374 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11764 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11699 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11634 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11439 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.