miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28312 3' -47.5 NC_005905.1 + 11504 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11634 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 19831 1.03 0.020028
Target:  5'- gGCCAAGUUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17627 1.03 0.020658
Target:  5'- aCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- cGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17757 1.03 0.020658
Target:  5'- aCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- cGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 20176 1 0.033844
Target:  5'- gGCCAAGCUAGCcUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGaAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 8743 0.99 0.037111
Target:  5'- gGCCAAGCUAGCUUCGAC-AAUCUCAAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGuUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 8962 0.99 0.039458
Target:  5'- aGCCAAGCUAGCUUCGACAAA-CUCAAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUaGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 20051 0.97 0.047407
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 19876 0.97 0.047407
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 19656 0.97 0.047407
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 17803 0.97 0.047407
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 8698 0.97 0.048876
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAc -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 8807 0.97 0.048876
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAc -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 9026 0.97 0.048876
Target:  5'- gGCCAAGCUAGCUUCGACAAAUUUUAc -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 17189 0.96 0.058663
Target:  5'- gGCCAAGCUAGCUUCaACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGcUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 20006 0.95 0.064244
Target:  5'- gGCCAAGCUAGCUUCGACAAAUaUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAgAGUU- -5'
28312 3' -47.5 NC_005905.1 + 22050 0.93 0.092119
Target:  5'- aGCCAAGUUAGCUUCGACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 22140 0.92 0.097765
Target:  5'- gGCCAAGUUAGCUUCGACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 17848 0.92 0.106849
Target:  5'- uGCCGAGUUAGCUUCGACAAAUUUUAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.