miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28312 3' -47.5 NC_005905.1 + 11504 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11569 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11634 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11699 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11764 1.05 0.014689
Target:  5'- gGCCAAGCUAGCUUCGAUAAAUCUCAAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 11829 0.85 0.257661
Target:  5'- gGCCAAGCUAGCUUCGAUAAGUa---- -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAgaguu -5'
28312 3' -47.5 NC_005905.1 + 14665 0.66 0.994087
Target:  5'- aGCCGAGCaGGCUuuaUCGaACGAAUUggaCAGa -3'
miRNA:   3'- -CGGUUCGaUCGA---AGC-UGUUUAGa--GUU- -5'
28312 3' -47.5 NC_005905.1 + 17041 0.68 0.973673
Target:  5'- aGCCGGGCUGGacUCGAUAaacauAAUCUUAu -3'
miRNA:   3'- -CGGUUCGAUCgaAGCUGU-----UUAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 17151 0.71 0.911262
Target:  5'- aGCCGGGCUGGacUCGAUAAacauaaucuuAUCUCAu -3'
miRNA:   3'- -CGGUUCGAUCgaAGCUGUU----------UAGAGUu -5'
28312 3' -47.5 NC_005905.1 + 17189 0.96 0.058663
Target:  5'- gGCCAAGCUAGCUUCaACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGcUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17234 0.9 0.14315
Target:  5'- gGCCGAGUUAGCUUCGACAAAUUugaUCGAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAG---AGUU- -5'
28312 3' -47.5 NC_005905.1 + 17299 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17344 0.85 0.257661
Target:  5'- gGCCGAGUUAGCUUUGACAAAUUugaUCGAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAG---AGUU- -5'
28312 3' -47.5 NC_005905.1 + 17409 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17454 0.85 0.257661
Target:  5'- gGCCGAGUUAGCUUUGACAAAUUugaUCGAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAG---AGUU- -5'
28312 3' -47.5 NC_005905.1 + 17519 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17564 0.85 0.257661
Target:  5'- gGCCGAGUUAGCUUUGACAAAUUugaUCGAg -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAG---AGUU- -5'
28312 3' -47.5 NC_005905.1 + 17627 1.03 0.020658
Target:  5'- aCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- cGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17693 1.08 0.009505
Target:  5'- gGCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- -CGGUUCGAUCGAAGCUGUUUAGAGUU- -5'
28312 3' -47.5 NC_005905.1 + 17757 1.03 0.020658
Target:  5'- aCCAAGCUAGCUUCGACAAAUCUCGAu -3'
miRNA:   3'- cGGUUCGAUCGAAGCUGUUUAGAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.