Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28312 | 5' | -49.6 | NC_005905.1 | + | 8667 | 1.11 | 0.005323 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGCCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 8886 | 1.11 | 0.005323 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGCCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 17595 | 1.05 | 0.012678 |
Target: 5'- aGAUUAGGUUUAUCGAGUUCAGCCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 17375 | 1.05 | 0.012678 |
Target: 5'- aGAUUAGGUUUAUCGAGUUCAGCCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 17485 | 1.05 | 0.012678 |
Target: 5'- aGAUUAGGUUUAUCGAGUUCAGCCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 19972 | 1.01 | 0.023698 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 20147 | 1.01 | 0.023698 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 19797 | 1.01 | 0.023698 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 17724 | 1.01 | 0.023698 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 17659 | 1.01 | 0.023698 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 19907 | 1.01 | 0.023698 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 8776 | 1.01 | 0.023698 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 8995 | 1.01 | 0.023698 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 17155 | 0.98 | 0.036944 |
Target: 5'- aGAUUAuGUUUAUCGAGUCCAGCCCGGc -3' miRNA: 3'- -CUAAUcCAAAUAGCUCAGGUCGGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 17265 | 0.98 | 0.036944 |
Target: 5'- aGAUUAuGUUUAUCGAGUCCAGCCCGGc -3' miRNA: 3'- -CUAAUcCAAAUAGCUCAGGUCGGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 19532 | 0.96 | 0.045395 |
Target: 5'- aAUUAGGUUUAUCGAGUCCAGgCCGGc -3' miRNA: 3'- cUAAUCCAAAUAGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 20082 | 0.96 | 0.04957 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGgUCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 17879 | 0.95 | 0.055722 |
Target: 5'- cGAUUAGGUUUAUCGAGUUUAGCUCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 19687 | 0.9 | 0.111251 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGgUCGu -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCgGGCc -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 19745 | 0.75 | 0.67484 |
Target: 5'- ------uUUUAUCGAGUCCAGgCCGGc -3' miRNA: 3'- cuaauccAAAUAGCUCAGGUCgGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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