miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28312 5' -49.6 NC_005905.1 + 8667 1.11 0.005323
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGCCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5'
28312 5' -49.6 NC_005905.1 + 8776 1.01 0.023698
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 8828 0.66 0.988626
Target:  5'- ------uUUUAcCGAGUCCAGgCCGGc -3'
miRNA:   3'- cuaauccAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 8886 1.11 0.005323
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGCCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5'
28312 5' -49.6 NC_005905.1 + 8938 0.66 0.988626
Target:  5'- ------uUUUAcCGAGUCCAGgCCGGc -3'
miRNA:   3'- cuaauccAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 8995 1.01 0.023698
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 9106 0.72 0.809944
Target:  5'- aAUUGGGUaUAUUGAaUUUAGCCCGGc -3'
miRNA:   3'- cUAAUCCAaAUAGCUcAGGUCGGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11089 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11154 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11219 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11284 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11349 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11414 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11479 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11544 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11609 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11674 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11739 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 11804 0.67 0.976195
Target:  5'- -----aGUUUGcCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 17155 0.98 0.036944
Target:  5'- aGAUUAuGUUUAUCGAGUCCAGCCCGGc -3'
miRNA:   3'- -CUAAUcCAAAUAGCUCAGGUCGGGCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.