Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28312 | 5' | -49.6 | NC_005905.1 | + | 8667 | 1.11 | 0.005323 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGCCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 8776 | 1.01 | 0.023698 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 8828 | 0.66 | 0.988626 |
Target: 5'- ------uUUUAcCGAGUCCAGgCCGGc -3' miRNA: 3'- cuaauccAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 8886 | 1.11 | 0.005323 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGCCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 8938 | 0.66 | 0.988626 |
Target: 5'- ------uUUUAcCGAGUCCAGgCCGGc -3' miRNA: 3'- cuaauccAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 8995 | 1.01 | 0.023698 |
Target: 5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3' miRNA: 3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 9106 | 0.72 | 0.809944 |
Target: 5'- aAUUGGGUaUAUUGAaUUUAGCCCGGc -3' miRNA: 3'- cUAAUCCAaAUAGCUcAGGUCGGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 11089 | 0.67 | 0.976195 |
Target: 5'- -----aGUUUGcCGAGUCCAGaCCGGc -3' miRNA: 3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 11154 | 0.67 | 0.976195 |
Target: 5'- -----aGUUUGcCGAGUCCAGaCCGGc -3' miRNA: 3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 11219 | 0.67 | 0.976195 |
Target: 5'- -----aGUUUGcCGAGUCCAGaCCGGc -3' miRNA: 3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 11284 | 0.67 | 0.976195 |
Target: 5'- -----aGUUUGcCGAGUCCAGaCCGGc -3' miRNA: 3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 11349 | 0.67 | 0.976195 |
Target: 5'- -----aGUUUGcCGAGUCCAGaCCGGc -3' miRNA: 3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 11414 | 0.67 | 0.976195 |
Target: 5'- -----aGUUUGcCGAGUCCAGaCCGGc -3' miRNA: 3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 11479 | 0.67 | 0.976195 |
Target: 5'- -----aGUUUGcCGAGUCCAGaCCGGc -3' miRNA: 3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 11544 | 0.67 | 0.976195 |
Target: 5'- -----aGUUUGcCGAGUCCAGaCCGGc -3' miRNA: 3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 11609 | 0.67 | 0.976195 |
Target: 5'- -----aGUUUGcCGAGUCCAGaCCGGc -3' miRNA: 3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 11674 | 0.67 | 0.976195 |
Target: 5'- -----aGUUUGcCGAGUCCAGaCCGGc -3' miRNA: 3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 11739 | 0.67 | 0.976195 |
Target: 5'- -----aGUUUGcCGAGUCCAGaCCGGc -3' miRNA: 3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 11804 | 0.67 | 0.976195 |
Target: 5'- -----aGUUUGcCGAGUCCAGaCCGGc -3' miRNA: 3'- cuaaucCAAAUaGCUCAGGUCgGGCC- -5' |
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28312 | 5' | -49.6 | NC_005905.1 | + | 17155 | 0.98 | 0.036944 |
Target: 5'- aGAUUAuGUUUAUCGAGUCCAGCCCGGc -3' miRNA: 3'- -CUAAUcCAAAUAGCUCAGGUCGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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