miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28312 5' -49.6 NC_005905.1 + 19855 0.72 0.837503
Target:  5'- ------uUUUAUCGAGUCCAGaCCGGc -3'
miRNA:   3'- cuaauccAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 9106 0.72 0.809944
Target:  5'- aAUUGGGUaUAUUGAaUUUAGCCCGGc -3'
miRNA:   3'- cUAAUCCAaAUAGCUcAGGUCGGGCC- -5'
28312 5' -49.6 NC_005905.1 + 19745 0.75 0.67484
Target:  5'- ------uUUUAUCGAGUCCAGgCCGGc -3'
miRNA:   3'- cuaauccAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 19687 0.9 0.111251
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGgUCGu -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCgGGCc -5'
28312 5' -49.6 NC_005905.1 + 17879 0.95 0.055722
Target:  5'- cGAUUAGGUUUAUCGAGUUUAGCUCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5'
28312 5' -49.6 NC_005905.1 + 20082 0.96 0.04957
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGgUCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 19532 0.96 0.045395
Target:  5'- aAUUAGGUUUAUCGAGUCCAGgCCGGc -3'
miRNA:   3'- cUAAUCCAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 17155 0.98 0.036944
Target:  5'- aGAUUAuGUUUAUCGAGUCCAGCCCGGc -3'
miRNA:   3'- -CUAAUcCAAAUAGCUCAGGUCGGGCC- -5'
28312 5' -49.6 NC_005905.1 + 17265 0.98 0.036944
Target:  5'- aGAUUAuGUUUAUCGAGUCCAGCCCGGc -3'
miRNA:   3'- -CUAAUcCAAAUAGCUCAGGUCGGGCC- -5'
28312 5' -49.6 NC_005905.1 + 19907 1.01 0.023698
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 19797 1.01 0.023698
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 17724 1.01 0.023698
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 17659 1.01 0.023698
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 19972 1.01 0.023698
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 20147 1.01 0.023698
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 8995 1.01 0.023698
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 8776 1.01 0.023698
Target:  5'- aGAUUAGGUUUAUCGAGUCCAGgCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCgGGCC- -5'
28312 5' -49.6 NC_005905.1 + 17375 1.05 0.012678
Target:  5'- aGAUUAGGUUUAUCGAGUUCAGCCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5'
28312 5' -49.6 NC_005905.1 + 17595 1.05 0.012678
Target:  5'- aGAUUAGGUUUAUCGAGUUCAGCCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5'
28312 5' -49.6 NC_005905.1 + 17485 1.05 0.012678
Target:  5'- aGAUUAGGUUUAUCGAGUUCAGCCCGGc -3'
miRNA:   3'- -CUAAUCCAAAUAGCUCAGGUCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.