miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28315 5' -43.2 NC_005905.1 + 20115 0.98 0.133748
Target:  5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28315 5' -43.2 NC_005905.1 + 19566 0.98 0.133748
Target:  5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28315 5' -43.2 NC_005905.1 + 17692 0.98 0.133748
Target:  5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28315 5' -43.2 NC_005905.1 + 17408 0.98 0.133748
Target:  5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28315 5' -43.2 NC_005905.1 + 9072 0.98 0.133748
Target:  5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28315 5' -43.2 NC_005905.1 + 19830 0.93 0.264747
Target:  5'- gCCAAGUUAGCUUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5'
28315 5' -43.2 NC_005905.1 + 8744 0.92 0.279417
Target:  5'- gCCAAGCUAGCUUCGAc-AAUCUCAAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUauUUAGAGUUc -5'
28315 5' -43.2 NC_005905.1 + 11830 0.9 0.344538
Target:  5'- gCCAAGCUAGCUUCGAUAAGUa-CGGGu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAgaGUUC- -5'
28315 5' -43.2 NC_005905.1 + 20175 0.89 0.409924
Target:  5'- gCCAAGCUAGCcUCGAcAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGaAGCUaUUUAGAGUUc -5'
28315 5' -43.2 NC_005905.1 + 20050 0.88 0.440213
Target:  5'- gCCAAGCUAGCUUCGAcAAAUUuuaUCGAGu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5'
28315 5' -43.2 NC_005905.1 + 19875 0.88 0.440213
Target:  5'- gCCAAGCUAGCUUCGAcAAAUUuuaUCGAGu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5'
28315 5' -43.2 NC_005905.1 + 19655 0.88 0.440213
Target:  5'- gCCAAGCUAGCUUCGAcAAAUUuuaUCGAGu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5'
28315 5' -43.2 NC_005905.1 + 8963 0.87 0.482496
Target:  5'- gCCAAGCUAGCUUCGAcAAA-CUCAAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUaGAGUUc -5'
28315 5' -43.2 NC_005905.1 + 17802 0.86 0.537923
Target:  5'- gCCAAGCUAGCUUCGAcAAAUUUUAu- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28315 5' -43.2 NC_005905.1 + 8699 0.86 0.549285
Target:  5'- gCCAAGCUAGCUUCGAcAAAUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28315 5' -43.2 NC_005905.1 + 8808 0.86 0.549285
Target:  5'- gCCAAGCUAGCUUCGAcAAAUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28315 5' -43.2 NC_005905.1 + 9027 0.86 0.549285
Target:  5'- gCCAAGCUAGCUUCGAcAAAUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28315 5' -43.2 NC_005905.1 + 17188 0.85 0.595375
Target:  5'- gCCAAGCUAGCUUCaacAAAUCUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGcuaUUUAGAGUUc -5'
28315 5' -43.2 NC_005905.1 + 20005 0.84 0.642017
Target:  5'- gCCAAGCUAGCUUCGAcAAAUaUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAgAGUUc -5'
28315 5' -43.2 NC_005905.1 + 17233 0.83 0.688491
Target:  5'- gCCGAGUUAGCUUCGAcAAAUUugaUCGAGa -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.