miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28316 3' -54.2 NC_005905.1 + 8815 0.67 0.797721
Target:  5'- uAGCUUcGAcaaauUUUaCCGAGUCCAGGCCg -3'
miRNA:   3'- uUCGGA-CUc----AAAcGGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 22087 0.67 0.788078
Target:  5'- uAGCUUcgacGAGUUUuaCCGAGUUUAGGCCg -3'
miRNA:   3'- uUCGGA----CUCAAAc-GGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 20058 0.68 0.772324
Target:  5'- cGGCUUGGGccaagcuaGCuucgacaaauuuuauCGAGUCCAGACCg -3'
miRNA:   3'- uUCGGACUCaaa-----CG---------------GCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 19883 0.68 0.772324
Target:  5'- cGGCUUGGGccaagcuaGCuucgacaaauuuuauCGAGUCCAGACCg -3'
miRNA:   3'- uUCGGACUCaaa-----CG---------------GCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 22152 0.68 0.752128
Target:  5'- gAGGCCUGcuuuggccaAGUUaGCuucgacaaauuuuauCGAGUCUAGGCCg -3'
miRNA:   3'- -UUCGGAC---------UCAAaCG---------------GCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 19773 0.68 0.741846
Target:  5'- cGGCUUGGGccaagcuaGCCucgacaaauuuuaucGAGUCCAGGCCg -3'
miRNA:   3'- uUCGGACUCaaa-----CGG---------------CUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 8915 0.7 0.656612
Target:  5'- uGGGCa-GAGUUaGCuucgacaaauuuuacCGAGUCCAGGCCg -3'
miRNA:   3'- -UUCGgaCUCAAaCG---------------GCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 21907 0.72 0.502528
Target:  5'- uAGCUUcgacGAGUUUuaCCGAGUCUAGGCCg -3'
miRNA:   3'- uUCGGA----CUCAAAc-GGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 21862 0.72 0.502528
Target:  5'- uAGCUUcgacGAGUUUuaCCGAGUCUAGGCCg -3'
miRNA:   3'- uUCGGA----CUCAAAc-GGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 21997 0.72 0.502528
Target:  5'- uAGCUUcgacGAGUUUuaCCGAGUCUAGGCCg -3'
miRNA:   3'- uUCGGA----CUCAAAc-GGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 21952 0.72 0.502528
Target:  5'- uAGCUUcgacGAGUUUuaCCGAGUCUAGGCCg -3'
miRNA:   3'- uUCGGA----CUCAAAc-GGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 11731 1.1 0.001577
Target:  5'- uAAGCCUGAGUUUGCCGAGUCCAGACCg -3'
miRNA:   3'- -UUCGGACUCAAACGGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 11081 1.1 0.001577
Target:  5'- uAAGCCUGAGUUUGCCGAGUCCAGACCg -3'
miRNA:   3'- -UUCGGACUCAAACGGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 11601 1.1 0.001577
Target:  5'- uAAGCCUGAGUUUGCCGAGUCCAGACCg -3'
miRNA:   3'- -UUCGGACUCAAACGGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 11536 1.1 0.001577
Target:  5'- uAAGCCUGAGUUUGCCGAGUCCAGACCg -3'
miRNA:   3'- -UUCGGACUCAAACGGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 11471 1.1 0.001577
Target:  5'- uAAGCCUGAGUUUGCCGAGUCCAGACCg -3'
miRNA:   3'- -UUCGGACUCAAACGGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 11406 1.1 0.001577
Target:  5'- uAAGCCUGAGUUUGCCGAGUCCAGACCg -3'
miRNA:   3'- -UUCGGACUCAAACGGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 11341 1.1 0.001577
Target:  5'- uAAGCCUGAGUUUGCCGAGUCCAGACCg -3'
miRNA:   3'- -UUCGGACUCAAACGGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 11276 1.1 0.001577
Target:  5'- uAAGCCUGAGUUUGCCGAGUCCAGACCg -3'
miRNA:   3'- -UUCGGACUCAAACGGCUCAGGUCUGG- -5'
28316 3' -54.2 NC_005905.1 + 11211 1.1 0.001577
Target:  5'- uAAGCCUGAGUUUGCCGAGUCCAGACCg -3'
miRNA:   3'- -UUCGGACUCAAACGGCUCAGGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.