miRNA display CGI


Results 61 - 78 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28318 5' -43.2 NC_005905.1 + 19790 0.66 0.999995
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5'
28318 5' -43.2 NC_005905.1 + 19680 0.66 0.999995
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5'
28318 5' -43.2 NC_005905.1 + 17607 0.66 0.999995
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5'
28318 5' -43.2 NC_005905.1 + 8589 0.66 0.999995
Target:  5'- aCCGAuuUAGCUUCGAcAAAUUUUAc- -3'
miRNA:   3'- -GGUUcgAUCGAAGCUaUUUAGAGUuc -5'
28318 5' -43.2 NC_005905.1 + 39192 0.66 0.999993
Target:  5'- aCAAGuUUAGUUgUCGGUAAAuUCUCAAa -3'
miRNA:   3'- gGUUC-GAUCGA-AGCUAUUU-AGAGUUc -5'
28318 5' -43.2 NC_005905.1 + 17477 0.66 0.999985
Target:  5'- cCUAAGCcgGGCUgaacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5'
28318 5' -43.2 NC_005905.1 + 17257 0.66 0.999985
Target:  5'- cCUAAGCcgGGCUgaacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5'
28318 5' -43.2 NC_005905.1 + 19400 0.66 0.999985
Target:  5'- uCCAGGCUAGCUUgguccaagcCGGccUGGA-CUCGAu -3'
miRNA:   3'- -GGUUCGAUCGAA---------GCU--AUUUaGAGUUc -5'
28318 5' -43.2 NC_005905.1 + 17367 0.66 0.999985
Target:  5'- cCUAAGCcgGGCUgaacUCGAUAAaccuaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5'
28318 5' -43.2 NC_005905.1 + 19635 0.67 0.999959
Target:  5'- cCCAAGCcGGCcuggacUCGAUAAAauuUgUCGAGg -3'
miRNA:   3'- -GGUUCGaUCGa-----AGCUAUUU---AgAGUUC- -5'
28318 5' -43.2 NC_005905.1 + 19480 0.67 0.999959
Target:  5'- cCCAAGCcGGCUuggacUCGAUAAAauuUgUCGAa -3'
miRNA:   3'- -GGUUCGaUCGA-----AGCUAUUU---AgAGUUc -5'
28318 5' -43.2 NC_005905.1 + 17042 0.67 0.999943
Target:  5'- gCCGGGCUGGacUCGAUAaacauAAUCUUAu- -3'
miRNA:   3'- -GGUUCGAUCgaAGCUAU-----UUAGAGUuc -5'
28318 5' -43.2 NC_005905.1 + 17763 0.68 0.999923
Target:  5'- aCAAGCcgAGCUaaacUCGAUAAaccuaaucguAUCUCAu- -3'
miRNA:   3'- gGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5'
28318 5' -43.2 NC_005905.1 + 8920 0.7 0.998456
Target:  5'- -aGAGUUAGCUUCGAcAAAUUUUAc- -3'
miRNA:   3'- ggUUCGAUCGAAGCUaUUUAGAGUuc -5'
28318 5' -43.2 NC_005905.1 + 17147 0.72 0.995257
Target:  5'- cCCAAGCcgGGCUggacUCGAUAAacauaaucuuAUCUCAu- -3'
miRNA:   3'- -GGUUCGa-UCGA----AGCUAUU----------UAGAGUuc -5'
28318 5' -43.2 NC_005905.1 + 17907 0.72 0.994394
Target:  5'- gUCAAGUUAGCUUUGAcGAGUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28318 5' -43.2 NC_005905.1 + 9027 0.86 0.549285
Target:  5'- gCCAAGCUAGCUUCGAcAAAUUUUAc- -3'
miRNA:   3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5'
28318 5' -43.2 NC_005905.1 + 11115 1.12 0.019868
Target:  5'- gCCAAGCUAGCUUCGAUAAAUCUCAAGc -3'
miRNA:   3'- -GGUUCGAUCGAAGCUAUUUAGAGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.