Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28318 | 5' | -43.2 | NC_005905.1 | + | 39192 | 0.66 | 0.999993 |
Target: 5'- aCAAGuUUAGUUgUCGGUAAAuUCUCAAa -3' miRNA: 3'- gGUUC-GAUCGA-AGCUAUUU-AGAGUUc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 22139 | 0.82 | 0.711413 |
Target: 5'- gCCAAGUUAGCUUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 22094 | 0.81 | 0.777639 |
Target: 5'- gCCAAGUUAGCUUCGAcGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 22049 | 0.82 | 0.711413 |
Target: 5'- gCCAAGUUAGCUUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 22004 | 0.82 | 0.745105 |
Target: 5'- aCCAAGUUAGCUUCGAcGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 21959 | 0.81 | 0.777639 |
Target: 5'- gCCAAGUUAGCUUCGAcGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 21914 | 0.81 | 0.777639 |
Target: 5'- gCCAAGUUAGCUUCGAcGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 21869 | 0.81 | 0.777639 |
Target: 5'- gCCAAGUUAGCUUCGAcGAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 21824 | 0.81 | 0.788162 |
Target: 5'- aCCAAGUUAGCUUCGAcAAGUUUUAc- -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUuc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 21779 | 0.75 | 0.963998 |
Target: 5'- gCCAAGUUAGCUUCGAcgAAGcUUCGAc -3' miRNA: 3'- -GGUUCGAUCGAAGCUa-UUUaGAGUUc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 20175 | 0.89 | 0.409924 |
Target: 5'- gCCAAGCUAGCcUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGaAGCUaUUUAGAGUUc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 20115 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 20050 | 0.88 | 0.440213 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 20005 | 0.84 | 0.642017 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUaUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAgAGUUc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 19940 | 0.98 | 0.133748 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 19875 | 0.88 | 0.440213 |
Target: 5'- gCCAAGCUAGCUUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAG---AGUUC- -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 19855 | 0.66 | 0.999995 |
Target: 5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3' miRNA: 3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 19830 | 0.93 | 0.264747 |
Target: 5'- gCCAAGUUAGCUUCGAcAAAUCUCGAu -3' miRNA: 3'- -GGUUCGAUCGAAGCUaUUUAGAGUUc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 19790 | 0.66 | 0.999995 |
Target: 5'- cCCAAGCcGGCcuggacUCGAUAAaccuaaucuuAUCUCAu- -3' miRNA: 3'- -GGUUCGaUCGa-----AGCUAUU----------UAGAGUuc -5' |
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28318 | 5' | -43.2 | NC_005905.1 | + | 19765 | 0.78 | 0.881356 |
Target: 5'- gCCAAGCUAGCcUCGAcAAAUUuuaUCGAGu -3' miRNA: 3'- -GGUUCGAUCGaAGCUaUUUAG---AGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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