miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 3' -55.8 NC_005905.1 + 17710 0.87 0.049484
Target:  5'- aGCUUGGCCCAAGCCGGCCUaaaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGAccaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19473 0.96 0.011807
Target:  5'- aGCUUGGCCCAAGCCGGCUUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19954 0.94 0.015307
Target:  5'- aGCUagcUGGCCCAAGCCGACCUGGaCUCGa -3'
miRNA:   3'- -CGA---ACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19518 0.93 0.018195
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19913 0.93 0.018195
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 20082 0.93 0.018195
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17665 0.92 0.022251
Target:  5'- aGCUUGGUCCAAGCCGGCCUGGaUUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19563 0.9 0.031383
Target:  5'- aGCUUGGCCCAAGaCGACCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCgGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19739 0.89 0.039429
Target:  5'- aCUUGGCCCAAGCCggUCUGGaCUCGa -3'
miRNA:   3'- cGAACCGGGUUCGGuuGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19408 0.96 0.011807
Target:  5'- aGCUUGGUCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17535 0.96 0.011807
Target:  5'- aGCUUGGUCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 20022 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17205 1.11 0.001005
Target:  5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17315 1.11 0.001005
Target:  5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17425 1.11 0.001005
Target:  5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5'
28319 3' -55.8 NC_005905.1 + 17600 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19628 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19673 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19783 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28319 3' -55.8 NC_005905.1 + 19848 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.