Results 81 - 87 of 87 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28319 | 5' | -55 | NC_005905.1 | + | 17085 | 0.94 | 0.019993 |
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Target: 5'- uGUUGAAGCUAGCUUGGCCCAAGCCa- -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUCGGcc -5' |
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| 28319 | 5' | -55 | NC_005905.1 | + | 21677 | 0.94 | 0.019993 |
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Target: 5'- cGUCGAAGCUAACUUGGCCaAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGgUUCGGCC- -5' |
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| 28319 | 5' | -55 | NC_005905.1 | + | 21991 | 0.94 | 0.020576 |
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Target: 5'- cGUCGAAGCUAACUUGGCCCAAaCCGGc -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGGGUUcGGCC- -5' |
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| 28319 | 5' | -55 | NC_005905.1 | + | 19948 | 0.93 | 0.02308 |
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Target: 5'- uGUCGAAGCUAGCU-GGCCCAAGCCGa -3' miRNA: 3'- -CAGCUUCGAUUGAgCCGGGUUCGGCc -5' |
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| 28319 | 5' | -55 | NC_005905.1 | + | 17745 | 0.92 | 0.026636 |
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Target: 5'- uGUCGAAGCUAACUCGGCaCAAGCCGa -3' miRNA: 3'- -CAGCUUCGAUUGAGCCGgGUUCGGCc -5' |
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| 28319 | 5' | -55 | NC_005905.1 | + | 21947 | 0.92 | 0.030731 |
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Target: 5'- uGUCGAAGCU-ACUUGGCUCAAGCCGGc -3' miRNA: 3'- -CAGCUUCGAuUGAGCCGGGUUCGGCC- -5' |
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| 28319 | 5' | -55 | NC_005905.1 | + | 49152 | 0.83 | 0.111865 |
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Target: 5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3' miRNA: 3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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