miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 5' -55 NC_005905.1 + 17130 1.11 0.001397
Target:  5'- uGUCGAAGCUAACUCGGCCCAAGCCGGg -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8801 1.07 0.002569
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGg -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 21767 1.06 0.003057
Target:  5'- cGUCGAAGCUAACUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 21812 1.06 0.003057
Target:  5'- cGUCGAAGCUAACUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 21857 1.06 0.003057
Target:  5'- cGUCGAAGCUAACUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8846 1.06 0.003146
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19903 1.06 0.003146
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19728 1.06 0.003146
Target:  5'- uGUCGAAGCUAACUUGGCCCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19508 1.06 0.003146
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8955 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 9130 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8910 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 20012 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19838 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19773 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19618 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 19463 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17700 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17590 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8736 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.