miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 5' -55 NC_005905.1 + 8691 0.88 0.049841
Target:  5'- uGUCGAAGCUAAaUCGGUCCAAGCCGu -3'
miRNA:   3'- -CAGCUUCGAUUgAGCCGGGUUCGGCc -5'
28319 5' -55 NC_005905.1 + 8736 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8801 1.07 0.002569
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGg -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8810 0.67 0.807981
Target:  5'- ---cAAGCUAGCUucgacaaauuuuacCGaGUCCAGGCCGGc -3'
miRNA:   3'- cagcUUCGAUUGA--------------GC-CGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8846 1.06 0.003146
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8910 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8955 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 9010 0.66 0.854063
Target:  5'- aGUCcAGGCcGGCUUGGgCCAAGCUa- -3'
miRNA:   3'- -CAGcUUCGaUUGAGCCgGGUUCGGcc -5'
28319 5' -55 NC_005905.1 + 9020 1.01 0.007286
Target:  5'- uGUCGAAGCUAACUCuGCCCAAGCCGGg -3'
miRNA:   3'- -CAGCUUCGAUUGAGcCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 9065 1 0.007946
Target:  5'- uGUCGAAGCUAGCUUGGCUCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 9130 1.06 0.003334
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 9175 1.01 0.00649
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGCCGa -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUCGGCc -5'
28319 5' -55 NC_005905.1 + 9234 0.8 0.172008
Target:  5'- -----uGCUAACUCuGCCCAAGCCGGg -3'
miRNA:   3'- cagcuuCGAUUGAGcCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11217 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11282 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11347 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11412 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11477 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11542 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 11607 1.03 0.00472
Target:  5'- aUCGAAGCUAGCUUGGCCCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGGGUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.