miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28319 5' -55 NC_005905.1 + 49017 0.83 0.111865
Target:  5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49152 0.83 0.111865
Target:  5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49242 0.83 0.111865
Target:  5'- aUUGAGGCUcGgUCGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49107 0.83 0.111865
Target:  5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 48972 0.83 0.111865
Target:  5'- aUCGAGGCUcGgUUGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 22036 0.84 0.097518
Target:  5'- uGUCGAAGCUAACUUGGCCaaagCAGGCCu- -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGG----GUUCGGcc -5'
28319 5' -55 NC_005905.1 + 48928 0.84 0.094864
Target:  5'- -cCGAAGCUcGgUCGGCUCAAGCCGGu -3'
miRNA:   3'- caGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17810 0.85 0.08731
Target:  5'- uGUCaGAGCUAGCUUGGCCCAAaCCGGa -3'
miRNA:   3'- -CAGcUUCGAUUGAGCCGGGUUcGGCC- -5'
28319 5' -55 NC_005905.1 + 19399 0.87 0.064232
Target:  5'- aUCcAGGCUAGCUUGGUCCAAGCCGGc -3'
miRNA:   3'- cAGcUUCGAUUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49332 0.87 0.062453
Target:  5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49062 0.87 0.062453
Target:  5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49197 0.87 0.062453
Target:  5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 49287 0.87 0.062453
Target:  5'- aUCGAGGCUcGgUCGGCUCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAuUgAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 8691 0.88 0.049841
Target:  5'- uGUCGAAGCUAAaUCGGUCCAAGCCGu -3'
miRNA:   3'- -CAGCUUCGAUUgAGCCGGGUUCGGCc -5'
28319 5' -55 NC_005905.1 + 19553 0.89 0.043256
Target:  5'- uGUCGAAGCUAGCUUGGCCCAAGacgacCUGGa -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUC-----GGCC- -5'
28319 5' -55 NC_005905.1 + 21947 0.92 0.030731
Target:  5'- uGUCGAAGCU-ACUUGGCUCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAuUGAGCCGGGUUCGGCC- -5'
28319 5' -55 NC_005905.1 + 17745 0.92 0.026636
Target:  5'- uGUCGAAGCUAACUCGGCaCAAGCCGa -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGgGUUCGGCc -5'
28319 5' -55 NC_005905.1 + 19948 0.93 0.02308
Target:  5'- uGUCGAAGCUAGCU-GGCCCAAGCCGa -3'
miRNA:   3'- -CAGCUUCGAUUGAgCCGGGUUCGGCc -5'
28319 5' -55 NC_005905.1 + 21991 0.94 0.020576
Target:  5'- cGUCGAAGCUAACUUGGCCCAAaCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGGUUcGGCC- -5'
28319 5' -55 NC_005905.1 + 21677 0.94 0.019993
Target:  5'- cGUCGAAGCUAACUUGGCCaAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGGgUUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.