Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28320 | 3' | -55.8 | NC_005905.1 | + | 19954 | 0.94 | 0.015307 |
Target: 5'- aGCUagcUGGCCCAAGCCGACCUGGaCUCGa -3' miRNA: 3'- -CGA---ACCGGGUUCGGUUGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 17144 | 0.8 | 0.1419 |
Target: 5'- ---cGGCCCAAGCCGGgCUGGaCUCGa -3' miRNA: 3'- cgaaCCGGGUUCGGUUgGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 21868 | 0.85 | 0.071359 |
Target: 5'- aCUUGGCCCAAGCCGGCCUaGaCUCGg -3' miRNA: 3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 21823 | 0.85 | 0.071359 |
Target: 5'- aCUUGGCCCAAGCCGGCCUaGaCUCGg -3' miRNA: 3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 21778 | 0.85 | 0.071359 |
Target: 5'- aCUUGGCCCAAGCCGGCCUaGaCUCGg -3' miRNA: 3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 17710 | 0.87 | 0.049484 |
Target: 5'- aGCUUGGCCCAAGCCGGCCUaaaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGAccaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 19739 | 0.89 | 0.039429 |
Target: 5'- aCUUGGCCCAAGCCggUCUGGaCUCGa -3' miRNA: 3'- cGAACCGGGUUCGGuuGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 19563 | 0.9 | 0.031383 |
Target: 5'- aGCUUGGCCCAAGaCGACCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCgGUUGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 17665 | 0.92 | 0.022251 |
Target: 5'- aGCUUGGUCCAAGCCGGCCUGGaUUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 20082 | 0.93 | 0.018195 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 19913 | 0.93 | 0.018195 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 19518 | 0.93 | 0.018195 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 17305 | 0.7 | 0.540862 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 22181 | 0.7 | 0.561749 |
Target: 5'- ----aGCCCAGGCCGGCUUGGg-UCGa -3' miRNA: 3'- cgaacCGGGUUCGGUUGGACCagAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 17195 | 0.7 | 0.561749 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcaacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcc-----AGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 49486 | 0.7 | 0.582849 |
Target: 5'- ---cGGCUUGAGCCuACCgGGUUUCGg -3' miRNA: 3'- cgaaCCGGGUUCGGuUGGaCCAGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 17764 | 0.67 | 0.7103 |
Target: 5'- gGCUUGGaCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 17634 | 0.67 | 0.7103 |
Target: 5'- gGCUUGGaCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 19772 | 0.67 | 0.761302 |
Target: 5'- gGCUUGGgCCAAGCUAGCCUcGa---- -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcCagagc -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 9165 | 1.02 | 0.004414 |
Target: 5'- aGCUUGGCCCAAGCCGACCUGGaCUCGg -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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