Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28320 | 3' | -55.8 | NC_005905.1 | + | 11368 | 0.68 | 0.69984 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11403 | 0.94 | 0.017177 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11433 | 0.68 | 0.69984 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11468 | 0.94 | 0.017177 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11498 | 0.68 | 0.69984 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11533 | 0.94 | 0.017177 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11563 | 0.68 | 0.69984 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11598 | 0.94 | 0.017177 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11628 | 0.68 | 0.69984 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11662 | 0.94 | 0.017177 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11693 | 0.68 | 0.69984 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11727 | 0.94 | 0.017177 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11758 | 0.68 | 0.69984 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11792 | 0.94 | 0.017177 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11823 | 0.68 | 0.657483 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcgauaaguacgGGUgUUGu -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGA-----------CCAgAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11857 | 0.94 | 0.017177 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 11922 | 0.94 | 0.017177 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 17034 | 0.75 | 0.306349 |
Target: 5'- ---cGGCUCAAGCCGGgCUGGaCUCGa -3' miRNA: 3'- cgaaCCGGGUUCGGUUgGACCaGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 17095 | 1.11 | 0.001005 |
Target: 5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5' |
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28320 | 3' | -55.8 | NC_005905.1 | + | 17144 | 0.8 | 0.1419 |
Target: 5'- ---cGGCCCAAGCCGGgCUGGaCUCGa -3' miRNA: 3'- cgaaCCGGGUUCGGUUgGACCaGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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