miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28320 5' -51.2 NC_005905.1 + 48928 0.76 0.487897
Target:  5'- -cCGAAGCUcGgUCGGCUcAAGCCGGu -3'
miRNA:   3'- caGUUUCGAuUgAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 8691 0.78 0.382029
Target:  5'- uGUCGAAGCUAAaUCGGUCcAAGCCGu -3'
miRNA:   3'- -CAGUUUCGAUUgAGCCGGaUUCGGCc -5'
28320 5' -51.2 NC_005905.1 + 49332 0.79 0.347502
Target:  5'- aUCGAGGCUcGgUCGGCUcAAGCCGGu -3'
miRNA:   3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 49287 0.79 0.347502
Target:  5'- aUCGAGGCUcGgUCGGCUcAAGCCGGu -3'
miRNA:   3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 49197 0.79 0.347502
Target:  5'- aUCGAGGCUcGgUCGGCUcAAGCCGGu -3'
miRNA:   3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 49062 0.79 0.347502
Target:  5'- aUCGAGGCUcGgUCGGCUcAAGCCGGu -3'
miRNA:   3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 19553 0.79 0.339226
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGacgacCUGGa -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUC-----GGCC- -5'
28320 5' -51.2 NC_005905.1 + 19399 0.81 0.285337
Target:  5'- aUCcAGGCUAGCUUGGUCcAAGCCGGc -3'
miRNA:   3'- cAGuUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 17085 0.83 0.203524
Target:  5'- uGUUGAAGCUAGCUUGGCCcAAGCCa- -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGcc -5'
28320 5' -51.2 NC_005905.1 + 19948 0.83 0.192911
Target:  5'- uGUCGAAGCUAGCU-GGCCcAAGCCGa -3'
miRNA:   3'- -CAGUUUCGAUUGAgCCGGaUUCGGCc -5'
28320 5' -51.2 NC_005905.1 + 21947 0.84 0.182786
Target:  5'- uGUCGAAGCU-ACUUGGCUcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAuUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 21991 0.84 0.173134
Target:  5'- cGUCGAAGCUAACUUGGCCcAAaCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUcGGCC- -5'
28320 5' -51.2 NC_005905.1 + 18009 0.84 0.173134
Target:  5'- cGUCAAAGCUAACUugacagaaacCGGCCUGaacucgguuuaAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGA----------GCCGGAU-----------UCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 22036 0.85 0.163939
Target:  5'- uGUCGAAGCUAACUUGGCCaAAGCaGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGgCC- -5'
28320 5' -51.2 NC_005905.1 + 17810 0.86 0.138939
Target:  5'- uGUCAGAGCUAGCUUGGCCcAAaCCGGa -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUcGGCC- -5'
28320 5' -51.2 NC_005905.1 + 17745 0.88 0.102001
Target:  5'- uGUCGAAGCUAACUCGGCacAAGCCGa -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGgaUUCGGCc -5'
28320 5' -51.2 NC_005905.1 + 21722 0.88 0.099144
Target:  5'- uGUCGAAGCUAACUUGGUUcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28320 5' -51.2 NC_005905.1 + 17195 0.89 0.093656
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCa- -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGcc -5'
28320 5' -51.2 NC_005905.1 + 17305 0.89 0.093656
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCa- -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGcc -5'
28320 5' -51.2 NC_005905.1 + 17415 0.89 0.093656
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCa- -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.