Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 28321 | 3' | -55.8 | NC_005905.1 | + | 19628 | 1.01 | 0.005407 |
|
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 19673 | 1.01 | 0.005407 |
|
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 19783 | 1.01 | 0.005407 |
|
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 19848 | 1.01 | 0.005407 |
|
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 20022 | 1.01 | 0.005407 |
|
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 9165 | 1.02 | 0.004414 |
|
Target: 5'- aGCUUGGCCCAAGCCGACCUGGaCUCGg -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 17425 | 1.11 | 0.001005 |
|
Target: 5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 17315 | 1.11 | 0.001005 |
|
Target: 5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 17205 | 1.11 | 0.001005 |
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Target: 5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 17095 | 1.11 | 0.001005 |
|
Target: 5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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