Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 17710 | 0.87 | 0.049484 |
Target: 5'- aGCUUGGCCCAAGCCGGCCUaaaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGAccaGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 21823 | 0.85 | 0.071359 |
Target: 5'- aCUUGGCCCAAGCCGGCCUaGaCUCGg -3' miRNA: 3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 21868 | 0.85 | 0.071359 |
Target: 5'- aCUUGGCCCAAGCCGGCCUaGaCUCGg -3' miRNA: 3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 21778 | 0.85 | 0.071359 |
Target: 5'- aCUUGGCCCAAGCCGGCCUaGaCUCGg -3' miRNA: 3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 17144 | 0.8 | 0.1419 |
Target: 5'- ---cGGCCCAAGCCGGgCUGGaCUCGa -3' miRNA: 3'- cgaaCCGGGUUCGGUUgGACCaGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 21957 | 0.77 | 0.221782 |
Target: 5'- aCUUGGCUCAAGCCGGCCUaaaCUCGg -3' miRNA: 3'- cGAACCGGGUUCGGUUGGAccaGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 19508 | 0.75 | 0.29188 |
Target: 5'- gGCUUGGaCCAAGCUAGCCUGGa---- -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGACCagagc -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 20182 | 0.75 | 0.299047 |
Target: 5'- gGCUUGGgCCAAGCUAGCCUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 21733 | 0.75 | 0.306349 |
Target: 5'- aCUUGGUUCAAGCCGGCCUaGaCUCGg -3' miRNA: 3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 17034 | 0.75 | 0.306349 |
Target: 5'- ---cGGCUCAAGCCGGgCUGGaCUCGa -3' miRNA: 3'- cgaaCCGGGUUCGGUUgGACCaGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 9014 | 0.74 | 0.369644 |
Target: 5'- aGCUaacucuGCCCAAGCCGGgCUGGaCUCGa -3' miRNA: 3'- -CGAac----CGGGUUCGGUUgGACCaGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 22002 | 0.73 | 0.413511 |
Target: 5'- aCUUGGCCCAAaCCGGCCUaGaCUCGa -3' miRNA: 3'- cGAACCGGGUUcGGUUGGAcCaGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 21688 | 0.71 | 0.499938 |
Target: 5'- aCUUGGCCaAAGCCGGCCUaaaCUCGg -3' miRNA: 3'- cGAACCGGgUUCGGUUGGAccaGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 17699 | 0.7 | 0.540862 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 19573 | 0.7 | 0.540862 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 17525 | 0.7 | 0.540862 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 49486 | 0.7 | 0.582849 |
Target: 5'- ---cGGCUUGAGCCuACCgGGUUUCGg -3' miRNA: 3'- cgaaCCGGGUUCGGuUGGaCCAGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 17195 | 0.7 | 0.561749 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcaacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcc-----AGAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 22181 | 0.7 | 0.561749 |
Target: 5'- ----aGCCCAGGCCGGCUUGGg-UCGa -3' miRNA: 3'- cgaacCGGGUUCGGUUGGACCagAGC- -5' |
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28321 | 3' | -55.8 | NC_005905.1 | + | 17305 | 0.7 | 0.540862 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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