Results 61 - 80 of 90 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19508 | 0.75 | 0.29188 |
Target: 5'- gGCUUGGaCCAAGCUAGCCUGGa---- -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGACCagagc -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19518 | 0.93 | 0.018195 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19563 | 0.9 | 0.031383 |
Target: 5'- aGCUUGGCCCAAGaCGACCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCgGUUGGACCaGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19573 | 0.7 | 0.540862 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19628 | 1.01 | 0.005407 |
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19673 | 1.01 | 0.005407 |
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19727 | 0.7 | 0.540862 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19739 | 0.89 | 0.039429 |
Target: 5'- aCUUGGCCCAAGCCggUCUGGaCUCGa -3' miRNA: 3'- cGAACCGGGUUCGGuuGGACCaGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19772 | 0.67 | 0.761302 |
Target: 5'- gGCUUGGgCCAAGCUAGCCUcGa---- -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcCagagc -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19783 | 1.01 | 0.005407 |
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19837 | 0.66 | 0.799923 |
Target: 5'- gGCUUGGgCCAAGUUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19848 | 1.01 | 0.005407 |
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19913 | 0.93 | 0.018195 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19947 | 0.7 | 0.540862 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 19954 | 0.94 | 0.015307 |
Target: 5'- aGCUagcUGGCCCAAGCCGACCUGGaCUCGa -3' miRNA: 3'- -CGA---ACCGGGUUCGGUUGGACCaGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 20022 | 1.01 | 0.005407 |
Target: 5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 20082 | 0.93 | 0.018195 |
Target: 5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3' miRNA: 3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 20122 | 0.7 | 0.540862 |
Target: 5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 20182 | 0.75 | 0.299047 |
Target: 5'- gGCUUGGgCCAAGCUAGCCUcGacaaaUCUCGa -3' miRNA: 3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5' |
|||||||
28321 | 3' | -55.8 | NC_005905.1 | + | 21636 | 0.68 | 0.646814 |
Target: 5'- ---cGGCUCAAGCCGGCCUauaCUCGc -3' miRNA: 3'- cgaaCCGGGUUCGGUUGGAccaGAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home