Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28321 | 3' | -55.8 | NC_005905.1 | + | 21688 | 0.71 | 0.499938 |
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Target: 5'- aCUUGGCCaAAGCCGGCCUaaaCUCGg -3' miRNA: 3'- cGAACCGGgUUCGGUUGGAccaGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 21733 | 0.75 | 0.306349 |
|
Target: 5'- aCUUGGUUCAAGCCGGCCUaGaCUCGg -3' miRNA: 3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 21778 | 0.85 | 0.071359 |
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Target: 5'- aCUUGGCCCAAGCCGGCCUaGaCUCGg -3' miRNA: 3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 21823 | 0.85 | 0.071359 |
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Target: 5'- aCUUGGCCCAAGCCGGCCUaGaCUCGg -3' miRNA: 3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 21868 | 0.85 | 0.071359 |
|
Target: 5'- aCUUGGCCCAAGCCGGCCUaGaCUCGg -3' miRNA: 3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 21957 | 0.77 | 0.221782 |
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Target: 5'- aCUUGGCUCAAGCCGGCCUaaaCUCGg -3' miRNA: 3'- cGAACCGGGUUCGGUUGGAccaGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 22002 | 0.73 | 0.413511 |
|
Target: 5'- aCUUGGCCCAAaCCGGCCUaGaCUCGa -3' miRNA: 3'- cGAACCGGGUUcGGUUGGAcCaGAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 22075 | 0.68 | 0.689319 |
|
Target: 5'- ---cGaCCCAAGCCGGCCUGGgCUa- -3' miRNA: 3'- cgaaCcGGGUUCGGUUGGACCaGAgc -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 22181 | 0.7 | 0.561749 |
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Target: 5'- ----aGCCCAGGCCGGCUUGGg-UCGa -3' miRNA: 3'- cgaacCGGGUUCGGUUGGACCagAGC- -5' |
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| 28321 | 3' | -55.8 | NC_005905.1 | + | 49486 | 0.7 | 0.582849 |
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Target: 5'- ---cGGCUUGAGCCuACCgGGUUUCGg -3' miRNA: 3'- cgaaCCGGGUUCGGuUGGaCCAGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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