miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28321 3' -55.8 NC_005905.1 + 17525 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17474 0.69 0.636133
Target:  5'- ---cGGCCUAAGCCGGgCUGaaCUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGUUgGACcaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17425 1.11 0.001005
Target:  5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17415 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17364 0.69 0.636133
Target:  5'- ---cGGCCUAAGCCGGgCUGaaCUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGUUgGACcaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17315 1.11 0.001005
Target:  5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17305 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17254 0.69 0.636133
Target:  5'- ---cGGCCUAAGCCGGgCUGaaCUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGUUgGACcaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17205 1.11 0.001005
Target:  5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17195 0.7 0.561749
Target:  5'- gGCUUGGgCCAAGCUAGCUUcaacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcc-----AGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17144 0.8 0.1419
Target:  5'- ---cGGCCCAAGCCGGgCUGGaCUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGUUgGACCaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17095 1.11 0.001005
Target:  5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17034 0.75 0.306349
Target:  5'- ---cGGCUCAAGCCGGgCUGGaCUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGUUgGACCaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 11922 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 11857 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 11823 0.68 0.657483
Target:  5'- gGCUUGGgCCAAGCUAGCUUcgauaaguacgGGUgUUGu -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGA-----------CCAgAGC- -5'
28321 3' -55.8 NC_005905.1 + 11792 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 11758 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28321 3' -55.8 NC_005905.1 + 11727 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 11693 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.