miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28321 3' -55.8 NC_005905.1 + 19628 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17600 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 21868 0.85 0.071359
Target:  5'- aCUUGGCCCAAGCCGGCCUaGaCUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17144 0.8 0.1419
Target:  5'- ---cGGCCCAAGCCGGgCUGGaCUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGUUgGACCaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 21957 0.77 0.221782
Target:  5'- aCUUGGCUCAAGCCGGCCUaaaCUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGUUGGAccaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 11238 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28321 3' -55.8 NC_005905.1 + 11173 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28321 3' -55.8 NC_005905.1 + 11108 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGauaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28321 3' -55.8 NC_005905.1 + 8846 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcgacaGaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGA-----CcAGAGc -5'
28321 3' -55.8 NC_005905.1 + 8627 0.68 0.69984
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGc -5'
28321 3' -55.8 NC_005905.1 + 22075 0.68 0.689319
Target:  5'- ---cGaCCCAAGCCGGCCUGGgCUa- -3'
miRNA:   3'- cgaaCcGGGUUCGGUUGGACCaGAgc -5'
28321 3' -55.8 NC_005905.1 + 11823 0.68 0.657483
Target:  5'- gGCUUGGgCCAAGCUAGCUUcgauaaguacgGGUgUUGu -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGA-----------CCAgAGC- -5'
28321 3' -55.8 NC_005905.1 + 8737 0.68 0.657483
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaUCUCa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC----AGAGc -5'
28321 3' -55.8 NC_005905.1 + 21636 0.68 0.646814
Target:  5'- ---cGGCUCAAGCCGGCCUauaCUCGc -3'
miRNA:   3'- cgaaCCGGGUUCGGUUGGAccaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17474 0.69 0.636133
Target:  5'- ---cGGCCUAAGCCGGgCUGaaCUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGUUgGACcaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 9065 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28321 3' -55.8 NC_005905.1 + 21688 0.71 0.499938
Target:  5'- aCUUGGCCaAAGCCGGCCUaaaCUCGg -3'
miRNA:   3'- cGAACCGGgUUCGGUUGGAccaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 22002 0.73 0.413511
Target:  5'- aCUUGGCCCAAaCCGGCCUaGaCUCGa -3'
miRNA:   3'- cGAACCGGGUUcGGUUGGAcCaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 21733 0.75 0.306349
Target:  5'- aCUUGGUUCAAGCCGGCCUaGaCUCGg -3'
miRNA:   3'- cGAACCGGGUUCGGUUGGAcCaGAGC- -5'
28321 3' -55.8 NC_005905.1 + 17034 0.75 0.306349
Target:  5'- ---cGGCUCAAGCCGGgCUGGaCUCGa -3'
miRNA:   3'- cgaaCCGGGUUCGGUUgGACCaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.