Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28321 | 5' | -51.2 | NC_005905.1 | + | 54451 | 0.67 | 0.918022 |
Target: 5'- cGUgGAAGCUAuagaaaaaaAUUUGGCCgaAAGUCGGu -3' miRNA: 3'- -CAgUUUCGAU---------UGAGCCGGa-UUCGGCC- -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49455 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUgGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49410 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49365 | 0.67 | 0.924028 |
Target: 5'- aUCAAGuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49332 | 0.79 | 0.347502 |
Target: 5'- aUCGAGGCUcGgUCGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49320 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49287 | 0.79 | 0.347502 |
Target: 5'- aUCGAGGCUcGgUCGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49242 | 0.74 | 0.627674 |
Target: 5'- aUUGAGGCUcGgUCGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49197 | 0.79 | 0.347502 |
Target: 5'- aUCGAGGCUcGgUCGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49185 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49152 | 0.75 | 0.55114 |
Target: 5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49107 | 0.75 | 0.55114 |
Target: 5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49062 | 0.79 | 0.347502 |
Target: 5'- aUCGAGGCUcGgUCGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49050 | 0.68 | 0.905183 |
Target: 5'- aUCAAAuCUaGAC-CGGCUUGAGCCGa -3' miRNA: 3'- cAGUUUcGA-UUGaGCCGGAUUCGGCc -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 49017 | 0.75 | 0.55114 |
Target: 5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 48972 | 0.75 | 0.55114 |
Target: 5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 48928 | 0.76 | 0.487897 |
Target: 5'- -cCGAAGCUcGgUCGGCUcAAGCCGGu -3' miRNA: 3'- caGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 22156 | 0.67 | 0.918635 |
Target: 5'- aGUCGAGGCcugcuuuggccaaguUAGCuucgacaaauuuuaUCGaGUCUAGGCCGGu -3' miRNA: 3'- -CAGUUUCG---------------AUUG--------------AGC-CGGAUUCGGCC- -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 22036 | 0.85 | 0.163939 |
Target: 5'- uGUCGAAGCUAACUUGGCCaAAGCaGGc -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGgCC- -5' |
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28321 | 5' | -51.2 | NC_005905.1 | + | 21991 | 0.84 | 0.173134 |
Target: 5'- cGUCGAAGCUAACUUGGCCcAAaCCGGc -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUcGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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