miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28321 5' -51.2 NC_005905.1 + 11801 0.94 0.040402
Target:  5'- aUCGAAGCUAGCUUGGCCcAAGCCGGu -3'
miRNA:   3'- cAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28321 5' -51.2 NC_005905.1 + 11866 0.94 0.040402
Target:  5'- aUCGAAGCUAGCUUGGCCcAAGCCGGu -3'
miRNA:   3'- cAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28321 5' -51.2 NC_005905.1 + 11931 0.94 0.040402
Target:  5'- aUCGAAGCUAGCUUGGCCcAAGCCGGu -3'
miRNA:   3'- cAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28321 5' -51.2 NC_005905.1 + 17022 0.75 0.540399
Target:  5'- -cCAuaaCUAACUCGGCUcAAGCCGGg -3'
miRNA:   3'- caGUuucGAUUGAGCCGGaUUCGGCC- -5'
28321 5' -51.2 NC_005905.1 + 17085 0.83 0.203524
Target:  5'- uGUUGAAGCUAGCUUGGCCcAAGCCa- -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGcc -5'
28321 5' -51.2 NC_005905.1 + 17130 1.02 0.011647
Target:  5'- uGUCGAAGCUAACUCGGCCcAAGCCGGg -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28321 5' -51.2 NC_005905.1 + 17195 0.89 0.093656
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCa- -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGcc -5'
28321 5' -51.2 NC_005905.1 + 17240 1.12 0.002777
Target:  5'- uGUCAAAGCUAACUCGGCCUAAGCCGGg -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGAUUCGGCC- -5'
28321 5' -51.2 NC_005905.1 + 17305 0.89 0.093656
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCa- -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGcc -5'
28321 5' -51.2 NC_005905.1 + 17350 1.12 0.002777
Target:  5'- uGUCAAAGCUAACUCGGCCUAAGCCGGg -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGAUUCGGCC- -5'
28321 5' -51.2 NC_005905.1 + 17364 0.66 0.965789
Target:  5'- aUCGA-GUUcAGCcCGGCUUAGGCCGa -3'
miRNA:   3'- cAGUUuCGA-UUGaGCCGGAUUCGGCc -5'
28321 5' -51.2 NC_005905.1 + 17415 0.89 0.093656
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCa- -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGcc -5'
28321 5' -51.2 NC_005905.1 + 17460 1.12 0.002777
Target:  5'- uGUCAAAGCUAACUCGGCCUAAGCCGGg -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGAUUCGGCC- -5'
28321 5' -51.2 NC_005905.1 + 17474 0.66 0.965789
Target:  5'- aUCGA-GUUcAGCcCGGCUUAGGCCGa -3'
miRNA:   3'- cAGUUuCGA-UUGaGCCGGAUUCGGCc -5'
28321 5' -51.2 NC_005905.1 + 17525 0.91 0.062599
Target:  5'- uGUCGAAGCUAGCUUGGUCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28321 5' -51.2 NC_005905.1 + 17584 0.66 0.965789
Target:  5'- aUCGA-GUUcAGCcCGGCUUAGGCCGa -3'
miRNA:   3'- cAGUUuCGA-UUGaGCCGGAUUCGGCc -5'
28321 5' -51.2 NC_005905.1 + 17590 0.97 0.028375
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28321 5' -51.2 NC_005905.1 + 17655 0.91 0.062599
Target:  5'- uGUCGAAGCUAGCUUGGUCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28321 5' -51.2 NC_005905.1 + 17700 0.97 0.028375
Target:  5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGc -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5'
28321 5' -51.2 NC_005905.1 + 17745 0.88 0.102001
Target:  5'- uGUCGAAGCUAACUCGGCacAAGCCGa -3'
miRNA:   3'- -CAGUUUCGAUUGAGCCGgaUUCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.