miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28322 3' -55.8 NC_005905.1 + 20122 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28322 3' -55.8 NC_005905.1 + 17764 0.67 0.7103
Target:  5'- gGCUUGGaCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28322 3' -55.8 NC_005905.1 + 8900 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 11598 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 19508 0.75 0.29188
Target:  5'- gGCUUGGaCCAAGCUAGCCUGGa---- -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGACCagagc -5'
28322 3' -55.8 NC_005905.1 + 17634 0.67 0.7103
Target:  5'- gGCUUGGaCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28322 3' -55.8 NC_005905.1 + 11533 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 19772 0.67 0.761302
Target:  5'- gGCUUGGgCCAAGCUAGCCUcGa---- -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcCagagc -5'
28322 3' -55.8 NC_005905.1 + 19837 0.66 0.799923
Target:  5'- gGCUUGGgCCAAGUUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28322 3' -55.8 NC_005905.1 + 17699 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28322 3' -55.8 NC_005905.1 + 8836 0.89 0.035181
Target:  5'- aGCUUGGCCCAAGCCggUUUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 11338 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 11662 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 11857 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 8945 1.01 0.005102
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 19573 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28322 3' -55.8 NC_005905.1 + 49486 0.7 0.582849
Target:  5'- ---cGGCUUGAGCCuACCgGGUUUCGg -3'
miRNA:   3'- cgaaCCGGGUUCGGuUGGaCCAGAGC- -5'
28322 3' -55.8 NC_005905.1 + 17305 0.7 0.540862
Target:  5'- gGCUUGGgCCAAGCUAGCUUcGacaaaUCUCGa -3'
miRNA:   3'- -CGAACCgGGUUCGGUUGGAcC-----AGAGC- -5'
28322 3' -55.8 NC_005905.1 + 21688 0.71 0.499938
Target:  5'- aCUUGGCCaAAGCCGGCCUaaaCUCGg -3'
miRNA:   3'- cGAACCGGgUUCGGUUGGAccaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 19518 0.93 0.018195
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.