miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28322 3' -55.8 NC_005905.1 + 17095 1.11 0.001005
Target:  5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5'
28322 3' -55.8 NC_005905.1 + 17205 1.11 0.001005
Target:  5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5'
28322 3' -55.8 NC_005905.1 + 17315 1.11 0.001005
Target:  5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5'
28322 3' -55.8 NC_005905.1 + 17425 1.11 0.001005
Target:  5'- aGCUUGGCCCAAGCCAACCUGGUCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCAGAGC- -5'
28322 3' -55.8 NC_005905.1 + 9165 1.02 0.004414
Target:  5'- aGCUUGGCCCAAGCCGACCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 8945 1.01 0.005102
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 19673 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 19783 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 19848 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 20022 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 19628 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 8900 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 17600 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 9120 1.01 0.005407
Target:  5'- aGCUUGGCCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 17535 0.96 0.011807
Target:  5'- aGCUUGGUCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 19473 0.96 0.011807
Target:  5'- aGCUUGGCCCAAGCCGGCUUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 19408 0.96 0.011807
Target:  5'- aGCUUGGUCCAAGCCGGCCUGGaCUCGa -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 9055 0.96 0.012153
Target:  5'- aGCUUGGCUCAAGCCGGCCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 19954 0.94 0.015307
Target:  5'- aGCUagcUGGCCCAAGCCGACCUGGaCUCGa -3'
miRNA:   3'- -CGA---ACCGGGUUCGGUUGGACCaGAGC- -5'
28322 3' -55.8 NC_005905.1 + 11208 0.94 0.017177
Target:  5'- aGCUUGGCCCAAGCCggUCUGGaCUCGg -3'
miRNA:   3'- -CGAACCGGGUUCGGuuGGACCaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.