Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28322 | 5' | -51.2 | NC_005905.1 | + | 21947 | 0.84 | 0.182786 |
Target: 5'- uGUCGAAGCU-ACUUGGCUcAAGCCGGc -3' miRNA: 3'- -CAGUUUCGAuUGAGCCGGaUUCGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 21767 | 0.97 | 0.025967 |
Target: 5'- cGUCGAAGCUAACUUGGCCcAAGCCGGc -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 17460 | 1.12 | 0.002777 |
Target: 5'- uGUCAAAGCUAACUCGGCCUAAGCCGGg -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGAUUCGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 49242 | 0.74 | 0.627674 |
Target: 5'- aUUGAGGCUcGgUCGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 49152 | 0.75 | 0.55114 |
Target: 5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 49107 | 0.75 | 0.55114 |
Target: 5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 17415 | 0.89 | 0.093656 |
Target: 5'- uGUCGAAGCUAGCUUGGCCcAAGCCa- -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGGcc -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 21722 | 0.88 | 0.099144 |
Target: 5'- uGUCGAAGCUAACUUGGUUcAAGCCGGc -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 17745 | 0.88 | 0.102001 |
Target: 5'- uGUCGAAGCUAACUCGGCacAAGCCGa -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGgaUUCGGCc -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 17810 | 0.86 | 0.138939 |
Target: 5'- uGUCAGAGCUAGCUUGGCCcAAaCCGGa -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUcGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 22036 | 0.85 | 0.163939 |
Target: 5'- uGUCGAAGCUAACUUGGCCaAAGCaGGc -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGgCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 21991 | 0.84 | 0.173134 |
Target: 5'- cGUCGAAGCUAACUUGGCCcAAaCCGGc -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUcGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 17655 | 0.91 | 0.062599 |
Target: 5'- uGUCGAAGCUAGCUUGGUCcAAGCCGGc -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 17525 | 0.91 | 0.062599 |
Target: 5'- uGUCGAAGCUAGCUUGGUCcAAGCCGGc -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 17305 | 0.89 | 0.093656 |
Target: 5'- uGUCGAAGCUAGCUUGGCCcAAGCCa- -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGGcc -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 19618 | 0.97 | 0.028375 |
Target: 5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGc -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 19463 | 0.97 | 0.028375 |
Target: 5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGc -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 17700 | 0.97 | 0.028375 |
Target: 5'- uGUCGAAGCUAGCUUGGCCcAAGCCGGc -3' miRNA: 3'- -CAGUUUCGAUUGAGCCGGaUUCGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 48972 | 0.75 | 0.55114 |
Target: 5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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28322 | 5' | -51.2 | NC_005905.1 | + | 49017 | 0.75 | 0.55114 |
Target: 5'- aUCGAGGCUcGgUUGGCUcAAGCCGGu -3' miRNA: 3'- cAGUUUCGAuUgAGCCGGaUUCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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