miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28323 5' -52.5 NC_005905.1 + 17460 0.84 0.14301
Target:  5'- uGUCaAAGCUAACUCGGCcUAAGCCGGg -3'
miRNA:   3'- -CAGcUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 17350 0.84 0.14301
Target:  5'- uGUCaAAGCUAACUCGGCcUAAGCCGGg -3'
miRNA:   3'- -CAGcUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 17240 0.84 0.14301
Target:  5'- uGUCaAAGCUAACUCGGCcUAAGCCGGg -3'
miRNA:   3'- -CAGcUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21947 0.85 0.121102
Target:  5'- uGUCGAAGCU-ACUUGGCuCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAuUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 17085 0.85 0.11452
Target:  5'- uGUUGAAGCUAGCUUGGCcCAAGCCa- -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGcu -5'
28323 5' -52.5 NC_005905.1 + 22036 0.87 0.096729
Target:  5'- uGUCGAAGCUAACUUGGCcaaaGCAGGCCu- -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCG----UGUUCGGcu -5'
28323 5' -52.5 NC_005905.1 + 19948 0.87 0.086354
Target:  5'- uGUCGAAGCUAGCU-GGCcCAAGCCGAc -3'
miRNA:   3'- -CAGCUUCGAUUGAgCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21677 0.88 0.083931
Target:  5'- cGUCGAAGCUAACUUGGCcaAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGugUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 9020 0.88 0.081573
Target:  5'- uGUCGAAGCUAACUCuGCcCAAGCCGGg -3'
miRNA:   3'- -CAGCUUCGAUUGAGcCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 17305 0.89 0.06302
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCa- -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGcu -5'
28323 5' -52.5 NC_005905.1 + 17415 0.89 0.06302
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCa- -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGcu -5'
28323 5' -52.5 NC_005905.1 + 17195 0.89 0.06302
Target:  5'- uGUCGAAGCUAGCUUGGCcCAAGCCa- -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGcu -5'
28323 5' -52.5 NC_005905.1 + 17525 0.91 0.050006
Target:  5'- uGUCGAAGCUAGCUUGGUcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 17655 0.91 0.050006
Target:  5'- uGUCGAAGCUAGCUUGGUcCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 21722 0.91 0.050006
Target:  5'- uGUCGAAGCUAACUUGGUuCAAGCCGGc -3'
miRNA:   3'- -CAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11347 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11282 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11217 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11412 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5'
28323 5' -52.5 NC_005905.1 + 11477 0.92 0.045834
Target:  5'- aUCGAAGCUAGCUUGGCcCAAGCCGGu -3'
miRNA:   3'- cAGCUUCGAUUGAGCCGuGUUCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.