Results 101 - 106 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28324 | 3' | -57.2 | NC_005905.1 | + | 20202 | 0.67 | 0.637171 |
Target: 5'- -cAGCguaucGaGUCCAGaCCGGCUUGGGCc -3' miRNA: 3'- gaUCGaa---C-CGGGUUcGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17241 | 0.66 | 0.669277 |
Target: 5'- -cGGCUUGGgCCGAGUUaGCUUcGACa -3' miRNA: 3'- gaUCGAACCgGGUUCGGcCGAAcCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17197 | 0.66 | 0.669277 |
Target: 5'- uUGGCUUGGgCCAAGCUaGCUUcaACa -3' miRNA: 3'- gAUCGAACCgGGUUCGGcCGAAccUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17913 | 0.66 | 0.676735 |
Target: 5'- uUAGCuUUGacgaguuuuacauaGUCUAGGCUGGCUUGGGa -3' miRNA: 3'- gAUCG-AAC--------------CGGGUUCGGCCGAACCUg -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 49246 | 0.66 | 0.679926 |
Target: 5'- -aGGCUcggucGGCUCAAGCCGGUcuaGACu -3' miRNA: 3'- gaUCGAa----CCGGGUUCGGCCGaacCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 8672 | 0.66 | 0.701084 |
Target: 5'- -aGGUUUaucGaGUCCAGcCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAA---C-CGGGUUcGGCCGAACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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