Results 61 - 80 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28324 | 3' | -57.2 | NC_005905.1 | + | 17817 | 0.83 | 0.068946 |
Target: 5'- gCUAGCUUGGCCCAAaCCGGacUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUcGGCCgaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17841 | 0.72 | 0.367111 |
Target: 5'- uUAGCUUcgacaaauuuuaucGaGUUUAGGCCGGCUUGGGCc -3' miRNA: 3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17913 | 0.66 | 0.676735 |
Target: 5'- uUAGCuUUGacgaguuuuacauaGUCUAGGCUGGCUUGGGa -3' miRNA: 3'- gAUCG-AAC--------------CGGGUUCGGCCGAACCUg -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19405 | 0.97 | 0.006523 |
Target: 5'- gCUAGCUUGGUCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19470 | 1.09 | 0.000901 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCUUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19515 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19528 | 0.78 | 0.137616 |
Target: 5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGACc -3' miRNA: 3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19560 | 0.78 | 0.145247 |
Target: 5'- gCUAGCUUGGCCCAAGaCGaCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCgGCcGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19605 | 0.83 | 0.064988 |
Target: 5'- gCUAGCUUcacaaauuuuaucGaGUCCAAGCCGGCUUGGGCc -3' miRNA: 3'- -GAUCGAA-------------C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19625 | 1.02 | 0.002974 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19650 | 0.71 | 0.401922 |
Target: 5'- gCUAGCUUcgacaaauuuuaucGaGUCCAGaCCGGCUUGGGCc -3' miRNA: 3'- -GAUCGAA--------------C-CGGGUUcGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19670 | 1.02 | 0.002974 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19735 | 0.88 | 0.03109 |
Target: 5'- gCUAaCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUcGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19760 | 0.75 | 0.219661 |
Target: 5'- gCUAGCcUcgacaaauuuuaucGaGUCCAGGCCGGCUUGGGCc -3' miRNA: 3'- -GAUCGaA--------------C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19780 | 1.02 | 0.002974 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19792 | 0.77 | 0.161677 |
Target: 5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19845 | 1.02 | 0.002974 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19870 | 0.71 | 0.401922 |
Target: 5'- gCUAGCUUcgacaaauuuuaucGaGUCCAGaCCGGCUUGGGCc -3' miRNA: 3'- -GAUCGAA--------------C-CGGGUUcGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19902 | 0.77 | 0.161677 |
Target: 5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19910 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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