Results 61 - 80 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28324 | 3' | -57.2 | NC_005905.1 | + | 17197 | 0.66 | 0.669277 |
Target: 5'- uUGGCUUGGgCCAAGCUaGCUUcaACa -3' miRNA: 3'- gAUCGAACCgGGUUCGGcCGAAccUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17135 | 0.78 | 0.153263 |
Target: 5'- -aAGCUaacucGGCCCAAGCCGGgcUGGACu -3' miRNA: 3'- gaUCGAa----CCGGGUUCGGCCgaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17092 | 0.76 | 0.204874 |
Target: 5'- gCUAGCUUGGCCCAAGCCaaCcUGGuCu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGccGaACCuG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17027 | 0.71 | 0.404616 |
Target: 5'- aCUAaCUcGGCUCAAGCCGGgcUGGACu -3' miRNA: 3'- -GAUcGAaCCGGGUUCGGCCgaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11925 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11860 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11803 | 0.7 | 0.460794 |
Target: 5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11795 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11738 | 0.7 | 0.460794 |
Target: 5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11730 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11673 | 0.7 | 0.460794 |
Target: 5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11665 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11608 | 0.7 | 0.460794 |
Target: 5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11601 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11543 | 0.7 | 0.460794 |
Target: 5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11536 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11478 | 0.7 | 0.460794 |
Target: 5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11471 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11413 | 0.7 | 0.460794 |
Target: 5'- -gAGUUUGccgaGUCCAGaCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAAC----CGGGUUcGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 11406 | 0.99 | 0.004602 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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