Results 101 - 106 of 106 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28324 | 3' | -57.2 | NC_005905.1 | + | 8794 | 0.94 | 0.010378 |
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Target: 5'- gCUAGCUUGGCCCAAGCCGGgcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCgaACCUG- -5' |
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| 28324 | 3' | -57.2 | NC_005905.1 | + | 8781 | 0.77 | 0.161677 |
|
Target: 5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5' |
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| 28324 | 3' | -57.2 | NC_005905.1 | + | 8729 | 1.03 | 0.002571 |
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Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACa -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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| 28324 | 3' | -57.2 | NC_005905.1 | + | 8704 | 0.71 | 0.375617 |
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Target: 5'- gCUAGCUUcgacaaauuuuaccGaGUCCAAaCCGGCUUGGGCc -3' miRNA: 3'- -GAUCGAA--------------C-CGGGUUcGGCCGAACCUG- -5' |
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| 28324 | 3' | -57.2 | NC_005905.1 | + | 8672 | 0.66 | 0.701084 |
|
Target: 5'- -aGGUUUaucGaGUCCAGcCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAA---C-CGGGUUcGGCCGAACCUG- -5' |
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| 28324 | 3' | -57.2 | NC_005905.1 | + | 8595 | 0.8 | 0.103857 |
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Target: 5'- uUAGCUUcgacaaauuuuaccGuGUCCAGGCCGGCUUGGGCc -3' miRNA: 3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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