Results 41 - 60 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28324 | 3' | -57.2 | NC_005905.1 | + | 19625 | 1.02 | 0.002974 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17597 | 1.02 | 0.002974 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19470 | 1.09 | 0.000901 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCUUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19735 | 0.88 | 0.03109 |
Target: 5'- gCUAaCUUGGCCCAAGCCGGUcUGGACu -3' miRNA: 3'- -GAUcGAACCGGGUUCGGCCGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17707 | 0.86 | 0.041391 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGCc----- -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGaaccug -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17092 | 0.76 | 0.204874 |
Target: 5'- gCUAGCUUGGCCCAAGCCaaCcUGGuCu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGccGaACCuG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 9000 | 0.77 | 0.161677 |
Target: 5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 8781 | 0.77 | 0.161677 |
Target: 5'- -aGGUUUaucGaGUCCAGGCCGGCUUGGGCc -3' miRNA: 3'- gaUCGAA---C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17135 | 0.78 | 0.153263 |
Target: 5'- -aAGCUaacucGGCCCAAGCCGGgcUGGACu -3' miRNA: 3'- gaUCGAa----CCGGGUUCGGCCgaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 9032 | 0.78 | 0.152035 |
Target: 5'- gCUAGCUUcgacaaauuuuaccGaGUCCAGGUCGGCUUGGGCc -3' miRNA: 3'- -GAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19560 | 0.78 | 0.145247 |
Target: 5'- gCUAGCUUGGCCCAAGaCGaCcUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCgGCcGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 21864 | 0.79 | 0.120124 |
Target: 5'- gCUAaCUUGGCCCAAGCCGGCcuaGACu -3' miRNA: 3'- -GAUcGAACCGGGUUCGGCCGaacCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 21819 | 0.79 | 0.120124 |
Target: 5'- gCUAaCUUGGCCCAAGCCGGCcuaGACu -3' miRNA: 3'- -GAUcGAACCGGGUUCGGCCGaacCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 21774 | 0.79 | 0.120124 |
Target: 5'- gCUAaCUUGGCCCAAGCCGGCcuaGACu -3' miRNA: 3'- -GAUcGAACCGGGUUCGGCCGaacCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 8595 | 0.8 | 0.103857 |
Target: 5'- uUAGCUUcgacaaauuuuaccGuGUCCAGGCCGGCUUGGGCc -3' miRNA: 3'- gAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 19955 | 0.81 | 0.086252 |
Target: 5'- gCUAGC-UGGCCCAAGCCGaCcUGGACu -3' miRNA: 3'- -GAUCGaACCGGGUUCGGCcGaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 8813 | 0.82 | 0.072319 |
Target: 5'- gCUAGCUUcgacaaauuuuaccGaGUCCAGGCCGGCUUGGGCc -3' miRNA: 3'- -GAUCGAA--------------C-CGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17817 | 0.83 | 0.068946 |
Target: 5'- gCUAGCUUGGCCCAAaCCGGacUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUcGGCCgaACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 8839 | 1.05 | 0.001813 |
Target: 5'- gCUAGCUUGGCCCAAGCCGGUUUGGACu -3' miRNA: 3'- -GAUCGAACCGGGUUCGGCCGAACCUG- -5' |
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28324 | 3' | -57.2 | NC_005905.1 | + | 17241 | 0.66 | 0.669277 |
Target: 5'- -cGGCUUGGgCCGAGUUaGCUUcGACa -3' miRNA: 3'- gaUCGAACCgGGUUCGGcCGAAcCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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