miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 5' -53.9 NC_005905.1 + 17083 1.07 0.002667
Target:  5'- uUUGUUGAAGCUAGCUUGGCCCAAGCCa -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17128 0.91 0.034397
Target:  5'- uUUGUCGAAGCUAaCUcGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17193 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17213 0.76 0.310707
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17238 0.75 0.334378
Target:  5'- uUUGUCaAAGCUAaCUcGGCCUAAGCCg -3'
miRNA:   3'- -AACAGcUUCGAUcGAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17303 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17323 0.76 0.310707
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17348 0.75 0.334378
Target:  5'- uUUGUCaAAGCUAaCUcGGCCUAAGCCg -3'
miRNA:   3'- -AACAGcUUCGAUcGAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17413 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17433 0.76 0.310707
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17458 0.75 0.334378
Target:  5'- uUUGUCaAAGCUAaCUcGGCCUAAGCCg -3'
miRNA:   3'- -AACAGcUUCGAUcGAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17523 1.05 0.00319
Target:  5'- uUUGUCGAAGCUAGCUUGGUCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17543 0.76 0.310707
Target:  5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17588 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17644 0.72 0.512594
Target:  5'- -aGUCcAGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17653 1.05 0.00319
Target:  5'- uUUGUCGAAGCUAGCUUGGUCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17698 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17709 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17743 0.78 0.24742
Target:  5'- uUUGUCGAAGCUAaCUcGGCaCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAaCCGgGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17778 0.68 0.729477
Target:  5'- --aUCGAauccaGGCcGGCUUGGaCCAAGCUa -3'
miRNA:   3'- aacAGCU-----UCGaUCGAACCgGGUUCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.