Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28324 | 5' | -53.9 | NC_005905.1 | + | 17083 | 1.07 | 0.002667 |
Target: 5'- uUUGUUGAAGCUAGCUUGGCCCAAGCCa -3' miRNA: 3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17128 | 0.91 | 0.034397 |
Target: 5'- uUUGUCGAAGCUAaCUcGGCCCAAGCCg -3' miRNA: 3'- -AACAGCUUCGAUcGAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17193 | 1.1 | 0.001424 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3' miRNA: 3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17213 | 0.76 | 0.310707 |
Target: 5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3' miRNA: 3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17238 | 0.75 | 0.334378 |
Target: 5'- uUUGUCaAAGCUAaCUcGGCCUAAGCCg -3' miRNA: 3'- -AACAGcUUCGAUcGAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17303 | 1.1 | 0.001424 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3' miRNA: 3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17323 | 0.76 | 0.310707 |
Target: 5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3' miRNA: 3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17348 | 0.75 | 0.334378 |
Target: 5'- uUUGUCaAAGCUAaCUcGGCCUAAGCCg -3' miRNA: 3'- -AACAGcUUCGAUcGAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17413 | 1.1 | 0.001424 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCa -3' miRNA: 3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17433 | 0.76 | 0.310707 |
Target: 5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3' miRNA: 3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17458 | 0.75 | 0.334378 |
Target: 5'- uUUGUCaAAGCUAaCUcGGCCUAAGCCg -3' miRNA: 3'- -AACAGcUUCGAUcGAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17523 | 1.05 | 0.00319 |
Target: 5'- uUUGUCGAAGCUAGCUUGGUCCAAGCCg -3' miRNA: 3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17543 | 0.76 | 0.310707 |
Target: 5'- uUUGaUCGAgaccaGGUUGGCUUGGgCCAAGCUa -3' miRNA: 3'- -AAC-AGCU-----UCGAUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17588 | 1.1 | 0.001424 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17644 | 0.72 | 0.512594 |
Target: 5'- -aGUCcAGGCcGGCUUGGaCCAAGCUa -3' miRNA: 3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17653 | 1.05 | 0.00319 |
Target: 5'- uUUGUCGAAGCUAGCUUGGUCCAAGCCg -3' miRNA: 3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17698 | 1.1 | 0.001424 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17709 | 0.75 | 0.359341 |
Target: 5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3' miRNA: 3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17743 | 0.78 | 0.24742 |
Target: 5'- uUUGUCGAAGCUAaCUcGGCaCAAGCCg -3' miRNA: 3'- -AACAGCUUCGAUcGAaCCGgGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 17778 | 0.68 | 0.729477 |
Target: 5'- --aUCGAauccaGGCcGGCUUGGaCCAAGCUa -3' miRNA: 3'- aacAGCU-----UCGaUCGAACCgGGUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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