Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28324 | 5' | -53.9 | NC_005905.1 | + | 8836 | 0.75 | 0.359341 |
Target: 5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3' miRNA: 3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 8803 | 1.1 | 0.001424 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 8791 | 0.75 | 0.359341 |
Target: 5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3' miRNA: 3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 8738 | 1.1 | 0.001424 |
Target: 5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3' miRNA: 3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 8693 | 0.82 | 0.136854 |
Target: 5'- uUUGUCGAAGCUAaaUcGGUCCAAGCCg -3' miRNA: 3'- -AACAGCUUCGAUcgAaCCGGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 8678 | 0.69 | 0.66464 |
Target: 5'- --aUCGAguccAGCccGGCUUGGgCCAAGCUa -3' miRNA: 3'- aacAGCU----UCGa-UCGAACCgGGUUCGG- -5' |
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28324 | 5' | -53.9 | NC_005905.1 | + | 8616 | 0.77 | 0.267244 |
Target: 5'- gUGUCcAGGCcGGCUUGGgCCAAGCUa -3' miRNA: 3'- aACAGcUUCGaUCGAACCgGGUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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