miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 5' -53.9 NC_005905.1 + 19901 1.1 0.001424
Target:  5'- uUUGUCGAAGCUAGCUUGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUCGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21812 0.96 0.014591
Target:  5'- -cGUCGAAGCUAaCUUGGCCCAAGCCg -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21857 0.96 0.014591
Target:  5'- -cGUCGAAGCUAaCUUGGCCCAAGCCg -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21945 0.92 0.028827
Target:  5'- uUUGUCGAAGCUA-CUUGGCUCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17128 0.91 0.034397
Target:  5'- uUUGUCGAAGCUAaCUcGGCCCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17808 0.88 0.051822
Target:  5'- uUUGUCaGAGCUAGCUUGGCCCAAaCCg -3'
miRNA:   3'- -AACAGcUUCGAUCGAACCGGGUUcGG- -5'
28324 5' -53.9 NC_005905.1 + 21720 0.88 0.053353
Target:  5'- cUUGUCGAAGCUAaCUUGGUUCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21991 0.87 0.063505
Target:  5'- -cGUCGAAGCUAaCUUGGCCCAaaccGGCCu -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGGU----UCGG- -5'
28324 5' -53.9 NC_005905.1 + 9055 0.72 0.502158
Target:  5'- -aGUCcAGGUcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49062 0.71 0.533723
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11286 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11221 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11156 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11091 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49242 0.68 0.760735
Target:  5'- --aUUGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 48928 0.69 0.697344
Target:  5'- ---cCGAAGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacaGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8678 0.69 0.66464
Target:  5'- --aUCGAguccAGCccGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aacAGCU----UCGa-UCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49332 0.71 0.533723
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49287 0.71 0.533723
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49197 0.71 0.533723
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.