miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28324 5' -53.9 NC_005905.1 + 49062 0.71 0.533723
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49197 0.71 0.533723
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49287 0.71 0.533723
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49332 0.71 0.533723
Target:  5'- --aUCGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8678 0.69 0.66464
Target:  5'- --aUCGAguccAGCccGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aacAGCU----UCGa-UCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 48928 0.69 0.697344
Target:  5'- ---cCGAAGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacaGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49242 0.68 0.760735
Target:  5'- --aUUGAGGCUcGgUcGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 11091 0.66 0.862976
Target:  5'- uUUGcCGAguccAGaCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- -AACaGCU----UC-GaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 21902 0.74 0.422473
Target:  5'- -cGUCGAAGCUAaCUUGGUUCAAaCCg -3'
miRNA:   3'- aaCAGCUUCGAUcGAACCGGGUUcGG- -5'
28324 5' -53.9 NC_005905.1 + 9010 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8836 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49017 0.79 0.200477
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49107 0.79 0.200477
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 49152 0.79 0.200477
Target:  5'- --aUCGAGGCUcGgUUGGCUCAAGCCg -3'
miRNA:   3'- aacAGCUUCGAuCgAACCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17743 0.78 0.24742
Target:  5'- uUUGUCGAAGCUAaCUcGGCaCAAGCCg -3'
miRNA:   3'- -AACAGCUUCGAUcGAaCCGgGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8616 0.77 0.267244
Target:  5'- gUGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aACAGcUUCGaUCGAACCgGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17238 0.75 0.334378
Target:  5'- uUUGUCaAAGCUAaCUcGGCCUAAGCCg -3'
miRNA:   3'- -AACAGcUUCGAUcGAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17348 0.75 0.334378
Target:  5'- uUUGUCaAAGCUAaCUcGGCCUAAGCCg -3'
miRNA:   3'- -AACAGcUUCGAUcGAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 17458 0.75 0.334378
Target:  5'- uUUGUCaAAGCUAaCUcGGCCUAAGCCg -3'
miRNA:   3'- -AACAGcUUCGAUcGAaCCGGGUUCGG- -5'
28324 5' -53.9 NC_005905.1 + 8791 0.75 0.359341
Target:  5'- -aGUCcAGGCcGGCUUGGgCCAAGCUa -3'
miRNA:   3'- aaCAGcUUCGaUCGAACCgGGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.