miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 3' -58.2 NC_005905.1 + 22077 0.87 0.032945
Target:  5'- -aCCCAAGCCGGCCUGGGCUaGAUAAa -3'
miRNA:   3'- ccGGGUUCGGCCGGACCUGAgCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 17714 0.9 0.018671
Target:  5'- uGGCCCAAGCCGGCCUaaACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAccUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 9161 0.95 0.008632
Target:  5'- uGGCCCAAGCCGaCCUGGACUCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCcGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 9005 0.95 0.008389
Target:  5'- uGCCCAAGCCGGgCUGGACUCGAUAAa -3'
miRNA:   3'- cCGGGUUCGGCCgGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 17034 0.95 0.008883
Target:  5'- cGGCUCAAGCCGGgCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCgGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 21781 0.96 0.007481
Target:  5'- uGGCCCAAGCCGGCCUaGACUCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11594 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11269 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 21871 0.96 0.007481
Target:  5'- uGGCCCAAGCCGGCCUaGACUCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 11204 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11334 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11723 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11399 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11464 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11529 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11658 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11788 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 11853 0.96 0.007064
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGGc-- -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19961 0.96 0.007269
Target:  5'- uGGCCCAAGCCGaCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCcGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 21826 0.96 0.007481
Target:  5'- uGGCCCAAGCCGGCCUaGACUCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.