Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28325 | 3' | -58.2 | NC_005905.1 | + | 17034 | 0.95 | 0.008883 |
Target: 5'- cGGCUCAAGCCGGgCUGGACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCgGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17714 | 0.9 | 0.018671 |
Target: 5'- uGGCCCAAGCCGGCCUaaACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAccUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 22077 | 0.87 | 0.032945 |
Target: 5'- -aCCCAAGCCGGCCUGGGCUaGAUAAa -3' miRNA: 3'- ccGGGUUCGGCCGGACCUGAgCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 21736 | 0.86 | 0.03586 |
Target: 5'- uGGUUCAAGCCGGCCUaGACUCGGUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 22005 | 0.85 | 0.041289 |
Target: 5'- uGGCCCAAaCCGGCCUaGACUCGAUAAa -3' miRNA: 3'- -CCGGGUUcGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 19567 | 0.84 | 0.047521 |
Target: 5'- uGGCCCAAGaCGaCCUGGACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCgGCcGGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17254 | 0.84 | 0.050262 |
Target: 5'- cGGCCUAAGCCGGgCUGaACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCgGACcUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17364 | 0.84 | 0.050262 |
Target: 5'- cGGCCUAAGCCGGgCUGaACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCgGACcUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17474 | 0.84 | 0.050262 |
Target: 5'- cGGCCUAAGCCGGgCUGaACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCgGACcUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 21960 | 0.84 | 0.05169 |
Target: 5'- uGGCUCAAGCCGGCCUaaACUCGGUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAccUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 49255 | 0.84 | 0.053157 |
Target: 5'- cGGCUCAAGCCGGUCUaGACUUGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 49389 | 0.84 | 0.054665 |
Target: 5'- aGGCUCAAGCCGGUCUaGACUUGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 49030 | 0.83 | 0.057806 |
Target: 5'- uGGCUCAAGCCGGUCUaGACUUGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 48985 | 0.83 | 0.057806 |
Target: 5'- uGGCUCAAGCCGGUCUaGACUUGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 49165 | 0.83 | 0.057806 |
Target: 5'- uGGCUCAAGCCGGUCUaGACUUGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 49120 | 0.83 | 0.057806 |
Target: 5'- uGGCUCAAGCCGGUCUaGACUUGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 22181 | 0.8 | 0.090023 |
Target: 5'- aGCCCAGGCCGGCUUGGG-UCGAa-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUgAGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 49300 | 0.8 | 0.100429 |
Target: 5'- cGGCUCAAGCCGGUCUaGAUUUGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 49210 | 0.8 | 0.100429 |
Target: 5'- cGGCUCAAGCCGGUCUaGAUUUGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 49075 | 0.8 | 0.100429 |
Target: 5'- cGGCUCAAGCCGGUCUaGAUUUGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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