miRNA display CGI


Results 61 - 80 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 3' -58.2 NC_005905.1 + 19522 1.03 0.002116
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19567 0.84 0.047521
Target:  5'- uGGCCCAAGaCGaCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCgGCcGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19583 0.76 0.185412
Target:  5'- aGUCCAAGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19632 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19677 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19737 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19742 1.03 0.002116
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19782 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagccUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19787 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19852 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19892 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19917 1.03 0.002116
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19957 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19961 0.96 0.007269
Target:  5'- uGGCCCAAGCCGaCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCcGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 20026 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 20067 0.71 0.384897
Target:  5'- aGUCCAGGUCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 20086 1.01 0.00282
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGAUAc -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUu -5'
28325 3' -58.2 NC_005905.1 + 20132 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 21636 0.78 0.138825
Target:  5'- cGGCUCAAGCCGGCCUauACUCGcUGAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAccUGAGCuAUU- -5'
28325 3' -58.2 NC_005905.1 + 21691 0.78 0.135168
Target:  5'- uGGCCaAAGCCGGCCUaaACUCGGUAAa -3'
miRNA:   3'- -CCGGgUUCGGCCGGAccUGAGCUAUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.