miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 3' -58.2 NC_005905.1 + 17034 0.95 0.008883
Target:  5'- cGGCUCAAGCCGGgCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCgGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 17714 0.9 0.018671
Target:  5'- uGGCCCAAGCCGGCCUaaACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAccUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 22077 0.87 0.032945
Target:  5'- -aCCCAAGCCGGCCUGGGCUaGAUAAa -3'
miRNA:   3'- ccGGGUUCGGCCGGACCUGAgCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 21736 0.86 0.03586
Target:  5'- uGGUUCAAGCCGGCCUaGACUCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19737 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19782 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagccUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19892 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19957 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 20132 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 19518 0.75 0.195242
Target:  5'- aGUCCAGGCCGGCUUGGACcaagcuagccUgGAUAAa -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AgCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 19583 0.76 0.185412
Target:  5'- aGUCCAAGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 17709 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 17773 0.72 0.335649
Target:  5'- -aUCCAGGCCGGCUUGGACcaagcuagcuUCGAc-- -3'
miRNA:   3'- ccGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 21976 0.71 0.351541
Target:  5'- aGUCUAGGCCGGCUUGGGCcaaguuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 21931 0.71 0.351541
Target:  5'- aGUCUAGGCCGGCUUGGGCcaaguuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 21886 0.71 0.351541
Target:  5'- aGUCUAGGCCGGCUUGGGCcaaguuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 20067 0.71 0.384897
Target:  5'- aGUCCAGGUCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 17250 0.68 0.536948
Target:  5'- aGUCCAGcCCGGCUUGGGC-CGAg-- -3'
miRNA:   3'- cCGGGUUcGGCCGGACCUGaGCUauu -5'
28325 3' -58.2 NC_005905.1 + 22111 0.67 0.588927
Target:  5'- aGUCUAGGCCGGUUUGGGCcaaguuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 9116 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.