Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28325 | 3' | -58.2 | NC_005905.1 | + | 17824 | 0.72 | 0.320289 |
Target: 5'- uGGCCCAAaCCGGaCUGGACUUuAUAAa -3' miRNA: 3'- -CCGGGUUcGGCCgGACCUGAGcUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 9055 | 0.71 | 0.384897 |
Target: 5'- aGUCCAGGUCGGCUUGGGCcaagcuagcuUCGAc-- -3' miRNA: 3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11098 | 0.7 | 0.438695 |
Target: 5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3' miRNA: 3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11163 | 0.7 | 0.438695 |
Target: 5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3' miRNA: 3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11228 | 0.7 | 0.438695 |
Target: 5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3' miRNA: 3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11293 | 0.7 | 0.438695 |
Target: 5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3' miRNA: 3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11553 | 0.7 | 0.438695 |
Target: 5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3' miRNA: 3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11488 | 0.7 | 0.438695 |
Target: 5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3' miRNA: 3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 11358 | 0.7 | 0.438695 |
Target: 5'- aGUCCAGaCCGGCUUGGGCcaagcuagcuUCGAUAAa -3' miRNA: 3'- cCGGGUUcGGCCGGACCUG----------AGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 49345 | 0.74 | 0.233296 |
Target: 5'- cGGCUCAAGCCGGUCcaGAUUUGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGacCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17144 | 1 | 0.003758 |
Target: 5'- cGGCCCAAGCCGGgCUGGACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCgGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 20086 | 1.01 | 0.00282 |
Target: 5'- uGGCCCAAGCCGGUCUGGACUCGAUAc -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUAUu -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17669 | 0.99 | 0.004096 |
Target: 5'- uGGUCCAAGCCGGCCUGGAUUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 49389 | 0.84 | 0.054665 |
Target: 5'- aGGCUCAAGCCGGUCUaGACUUGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 49255 | 0.84 | 0.053157 |
Target: 5'- cGGCUCAAGCCGGUCUaGACUUGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17539 | 1.03 | 0.002116 |
Target: 5'- uGGUCCAAGCCGGCCUGGACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 21960 | 0.84 | 0.05169 |
Target: 5'- uGGCUCAAGCCGGCCUaaACUCGGUAAa -3' miRNA: 3'- -CCGGGUUCGGCCGGAccUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17474 | 0.84 | 0.050262 |
Target: 5'- cGGCCUAAGCCGGgCUGaACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCgGACcUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17364 | 0.84 | 0.050262 |
Target: 5'- cGGCCUAAGCCGGgCUGaACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCgGACcUGAGCUAUU- -5' |
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28325 | 3' | -58.2 | NC_005905.1 | + | 17254 | 0.84 | 0.050262 |
Target: 5'- cGGCCUAAGCCGGgCUGaACUCGAUAAa -3' miRNA: 3'- -CCGGGUUCGGCCgGACcUGAGCUAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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