miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 3' -58.2 NC_005905.1 + 17144 1 0.003758
Target:  5'- cGGCCCAAGCCGGgCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCgGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 20086 1.01 0.00282
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGAUAc -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUu -5'
28325 3' -58.2 NC_005905.1 + 19917 1.03 0.002116
Target:  5'- uGGCCCAAGCCGGUCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 17539 1.03 0.002116
Target:  5'- uGGUCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 20026 1.08 0.000974
Target:  5'- uGGCCCAAGCCGGCCUGGACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGACCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 17364 0.84 0.050262
Target:  5'- cGGCCUAAGCCGGgCUGaACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCgGACcUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 17474 0.84 0.050262
Target:  5'- cGGCCUAAGCCGGgCUGaACUCGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCgGACcUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 21960 0.84 0.05169
Target:  5'- uGGCUCAAGCCGGCCUaaACUCGGUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAccUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 49345 0.74 0.233296
Target:  5'- cGGCUCAAGCCGGUCcaGAUUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGacCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 8617 0.75 0.21084
Target:  5'- uGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 9010 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 8836 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 8791 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 17429 0.78 0.142572
Target:  5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3'
miRNA:   3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5'
28325 3' -58.2 NC_005905.1 + 17319 0.78 0.142572
Target:  5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3'
miRNA:   3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5'
28325 3' -58.2 NC_005905.1 + 17209 0.78 0.142572
Target:  5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3'
miRNA:   3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5'
28325 3' -58.2 NC_005905.1 + 17099 0.78 0.142572
Target:  5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3'
miRNA:   3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5'
28325 3' -58.2 NC_005905.1 + 21636 0.78 0.138825
Target:  5'- cGGCUCAAGCCGGCCUauACUCGcUGAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAccUGAGCuAUU- -5'
28325 3' -58.2 NC_005905.1 + 49389 0.84 0.054665
Target:  5'- aGGCUCAAGCCGGUCUaGACUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 49255 0.84 0.053157
Target:  5'- cGGCUCAAGCCGGUCUaGACUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.