miRNA display CGI


Results 81 - 100 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 3' -58.2 NC_005905.1 + 17319 0.78 0.142572
Target:  5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3'
miRNA:   3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5'
28325 3' -58.2 NC_005905.1 + 17429 0.78 0.142572
Target:  5'- uGGCCCAAGCCaaCCUGGuCUCGAUc- -3'
miRNA:   3'- -CCGGGUUCGGccGGACCuGAGCUAuu -5'
28325 3' -58.2 NC_005905.1 + 8791 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 8836 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 9010 0.75 0.200326
Target:  5'- aGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 8617 0.75 0.21084
Target:  5'- uGUCCAGGCCGGCUUGGGCcaagcuagcuUCGAc-- -3'
miRNA:   3'- cCGGGUUCGGCCGGACCUG----------AGCUauu -5'
28325 3' -58.2 NC_005905.1 + 49345 0.74 0.233296
Target:  5'- cGGCUCAAGCCGGUCcaGAUUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGacCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 17824 0.72 0.320289
Target:  5'- uGGCCCAAaCCGGaCUGGACUUuAUAAa -3'
miRNA:   3'- -CCGGGUUcGGCCgGACCUGAGcUAUU- -5'
28325 3' -58.2 NC_005905.1 + 21636 0.78 0.138825
Target:  5'- cGGCUCAAGCCGGCCUauACUCGcUGAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAccUGAGCuAUU- -5'
28325 3' -58.2 NC_005905.1 + 21691 0.78 0.135168
Target:  5'- uGGCCaAAGCCGGCCUaaACUCGGUAAa -3'
miRNA:   3'- -CCGGgUUCGGCCGGAccUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 49255 0.84 0.053157
Target:  5'- cGGCUCAAGCCGGUCUaGACUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 49389 0.84 0.054665
Target:  5'- aGGCUCAAGCCGGUCUaGACUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 48985 0.83 0.057806
Target:  5'- uGGCUCAAGCCGGUCUaGACUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 49030 0.83 0.057806
Target:  5'- uGGCUCAAGCCGGUCUaGACUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 49120 0.83 0.057806
Target:  5'- uGGCUCAAGCCGGUCUaGACUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 49165 0.83 0.057806
Target:  5'- uGGCUCAAGCCGGUCUaGACUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 48940 0.8 0.100429
Target:  5'- cGGCUCAAGCCGGUCUaGAUUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 49075 0.8 0.100429
Target:  5'- cGGCUCAAGCCGGUCUaGAUUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 49210 0.8 0.100429
Target:  5'- cGGCUCAAGCCGGUCUaGAUUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5'
28325 3' -58.2 NC_005905.1 + 49300 0.8 0.100429
Target:  5'- cGGCUCAAGCCGGUCUaGAUUUGAUAAa -3'
miRNA:   3'- -CCGGGUUCGGCCGGAcCUGAGCUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.