miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28325 5' -59.4 NC_005905.1 + 19909 1.04 0.00167
Target:  5'- aGCUAGCUUGGCCCAAGCCGGUCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17706 0.99 0.003691
Target:  5'- aGCUAGCUUGGCCCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 21953 0.82 0.06278
Target:  5'- aGCUA-CUUGGCUCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 19559 0.85 0.036103
Target:  5'- aGCUAGCUUGGCCCAAGaCGaCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCgGCcGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17816 0.86 0.032294
Target:  5'- aGCUAGCUUGGCCCAAaCCGGaCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUcGGCCgGACC- -5'
28325 5' -59.4 NC_005905.1 + 21863 0.88 0.023744
Target:  5'- aGCUAaCUUGGCCCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 21818 0.88 0.023744
Target:  5'- aGCUAaCUUGGCCCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 21773 0.88 0.023744
Target:  5'- aGCUAaCUUGGCCCAAGCCGGCCUa- -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGAcc -5'
28325 5' -59.4 NC_005905.1 + 19954 0.88 0.021225
Target:  5'- aGCUAGC-UGGCCCAAGCCGaCCUGGa -3'
miRNA:   3'- cCGAUCGaACCGGGUUCGGCcGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17421 0.89 0.017934
Target:  5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGccGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17311 0.89 0.017934
Target:  5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGccGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17201 0.89 0.017934
Target:  5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGccGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17091 0.89 0.017934
Target:  5'- aGCUAGCUUGGCCCAAGCCaaCCUGGu -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGccGGACC- -5'
28325 5' -59.4 NC_005905.1 + 19734 0.92 0.010803
Target:  5'- aGCUAaCUUGGCCCAAGCCGGUCUGGa -3'
miRNA:   3'- cCGAUcGAACCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17719 0.69 0.437662
Target:  5'- aGGUUuaucgaGUCCAGGCCGGCUUGGg -3'
miRNA:   3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17654 0.69 0.456239
Target:  5'- aGGUUuaucgaGUCCAGGCCGGCUUGGa -3'
miRNA:   3'- -CCGAucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 22181 0.69 0.456239
Target:  5'- ---------aGCCCAGGCCGGCUUGGg -3'
miRNA:   3'- ccgaucgaacCGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 22135 0.68 0.491681
Target:  5'- aGUUAGCUUcgacaaauuuuaucGaGUCUAGGCCGGUUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 17843 0.68 0.501479
Target:  5'- aGUUAGCUUcgacaaauuuuaucGaGUUUAGGCCGGCUUGGg -3'
miRNA:   3'- cCGAUCGAA--------------C-CGGGUUCGGCCGGACC- -5'
28325 5' -59.4 NC_005905.1 + 9124 1.08 0.000777
Target:  5'- aGCUAGCUUGGCCCAAGCCGGCCUGGa -3'
miRNA:   3'- cCGAUCGAACCGGGUUCGGCCGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.